Hg_chrom4_TN10mRNA_7935
Organism: Heterodera glycines Gene Locus: chr4:5696837-5701054 Feature type: polypeptideProtein Sequence
Length: 824
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 1.044 | 1.015 | 0.753 | 0.748 | 1.649 | 0.52 | 2.124 | 0.836 | 1.0 | 0.552 | 1.071 | 1.112 | 1.377 | 1.164 | 2.098 | 0.796 | 0.864 | 0.28 | 0.464 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7470
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSR
|
— | — |
82-125
|
0.913
|
— | — |
0.000
|
— | — |
0.890
|
0.124
|
0.009
|
0.400
|
0.052
|
0.048
|
0.030
|
0.023
|
0.052
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008635
|
1.000
|
1.000
|
Hsc_gene_10374.t1
|
Hsc_gene_10374.t1
|
— |
Q17771.3 Nuclear hormone receptor family member nhr-35 [Caenorhabditis elegans]
|
KAI1723364.1 ligand-binding domain of nuclear hormone receptor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.857|GO:0005575_0.840|GO:0110165_0.814|GO:0009987_0.802|GO:0003674_0.795|GO:0005488_0.795|GO:0065007_0.792|GO:0050789_0.785|GO:0050794_0.784|GO:0005622_0.762|GO:0043226_0.733|GO:0008152_0.711|GO:0019222_0.711|GO:0031323_0.711|GO:0043229_0.711|GO:0044237_0.711|GO:0044238_0.706|GO:0080090_0.706|GO:0043170_0.704|GO:0060255_0.704|GO:0009058_0.695|GO:0009059_0.695|GO:0009889_0.695|GO:0010556_0.695|GO:0031326_0.695|GO:0044249_0.695|GO:0097159_0.692|GO:0010467_0.691|GO:0006139_0.687|GO:0016070_0.687|GO:0032774_0.687|GO:0034654_0.687|GO:0090304_0.687|GO:0141187_0.687|GO:0010468_0.684|GO:0006351_0.677|GO:0019219_0.675|GO:0051252_0.675|GO:2001141_0.669|GO:0006355_0.658|GO:0003676_0.639|GO:0006357_0.609|GO:0006366_0.609|GO:0003677_0.607|GO:0043565_0.607|GO:0016020_0.605|GO:0003690_0.575|GO:1990837_0.575|GO:0048518_0.569|GO:0048522_0.561|GO:0043227_0.535|GO:0005634_0.530|GO:0043231_0.530|GO:0000976_0.529|GO:0001067_0.529|GO:0050896_0.518|GO:0032501_0.513|GO:0009893_0.510|GO:0010604_0.507|GO:0031325_0.501
|
IPR000536+322-573_372-556_381-541+|IPR001628+91-162_91-166_93-160_94-110_94-120_110-125_143-151_151-159+|IPR001723+155-165_382-403_403-419_472-487+|IPR013088+85-187+|IPR035500+328-580_356-570+|IPR049636+94-169+|IPR050274+88-570+
|
SM00399+91-162+|SM00430+381-541+
|
PF00104+372-556+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+93-160+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000030+86-190+Nuclear_Hormone_Receptor_family
|
PTHR24083+88-570+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;167-330;567-621;712-824
|
3.000
|
65-166;331-566;622-711
|
5uan_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
90290.450
|
7.106
|
11.500
|
23.665
|
10.194
|
54.126
|
45.874
|
13.592
|
10.073
|
56.553
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey60
|
2110.338
|
2665.555
|
2520.630
|
1462.966
|
1799.750
|
2720.542
|
4039.342
|
4523.157
|
1196.539
|
935.846
|
1047.572
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.310
|
-1.003
|
-0.676
|
0.268
|
0.611
|
0.581
|
0.628
|
— | — | — | — | — | — |
No JSON data available for plots.