Hg_chrom4_TN10mRNA_7937
Organism: Heterodera glycines Gene Locus: chr4:5707137-5716051 Feature type: polypeptideProtein Sequence
Length: 1,966
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.84 | 0.899 | 0.684 | 0.596 | 1.034 | 1.122 | 0.745 | 1.043 | 0.836 | 1.409 | 0.455 | 1.047 | 1.766 | 1.379 | 1.246 | 1.613 | 0.876 | 1.01 | 1.056 | 0.359 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7472
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— | — | — |
57-107
|
0.989
|
1-30
|
0.968
|
1.000
|
0.000
|
0.000
|
0.329
|
0.245
|
0.168
|
0.342
|
0.245
|
0.120
|
0.251
|
0.187
|
0.503
|
0.548
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008637
|
1.000
|
1.000
|
Hsc_gene_10377.t1
|
Hsc_gene_10377.t1
|
— | — |
KAI1723966.1 EGF-like domain containing protein [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000742+56-67+|IPR002049+45-73+|IPR013783+98-192+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1705-1966
|
1.000
|
1-1704
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
216654.130
|
6.644
|
3.500
|
21.160
|
11.038
|
46.033
|
53.967
|
11.190
|
9.969
|
53.306
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
1146.140
|
883.347
|
3381.507
|
1402.405
|
410.593
|
641.237
|
293.378
|
1660.781
|
185.086
|
1623.081
|
1006.797
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.707
|
0.529
|
-1.161
|
-1.804
|
0.658
|
-1.117
|
1.269
|
-2.358
|
-3.239
|
— | — | — | — |