Hg_chrom4_TN10mRNA_7938
Organism: Heterodera glycines Gene Locus: chr4:5716413-5720595 Feature type: polypeptideProtein Sequence
Length: 381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.465 | 1.099 | 0.859 | 0.362 | 1.75 | 0.606 | 0.594 | 1.181 | 0.758 | 1.561 | 1.193 | 1.544 | 0.656 | 0.454 | 1.232 | 0.975 | 0.904 | 0.676 | 1.009 | 0.695 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7473
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
54-74
|
0.928
|
8-59
|
0.926
|
— | — |
0.000
|
— | — |
0.327
|
0.692
|
0.068
|
0.334
|
0.289
|
0.089
|
0.110
|
0.376
|
0.250
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008638
|
1.000
|
1.000
|
Hsc_gene_10378.t1
|
Hsc_gene_10378.t1;Hsc_gene_10378.t2
|
— |
P34560.2 Regulator of microtubule dynamics protein 1 [Caenorhabditis elegans]
|
KAF7640201.1 TPR_REGION domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.903|GO:0110165_0.902|GO:0005622_0.808|GO:0043226_0.747|GO:0043229_0.724|GO:0016020_0.598|GO:0003674_0.563|GO:0005737_0.554|GO:0043227_0.525|GO:0043231_0.503
|
IPR011990+150-360_207-350+|IPR019734+325-358+|IPR049039+179-351+
|
— |
PF21033+179-351+Regulator_of_microtubule_dynamics_protein_1-3
|
— |
PTHR16056+53-377+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-381
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
42474.200
|
6.428
|
-0.500
|
31.496
|
8.399
|
50.919
|
49.081
|
16.273
|
15.223
|
47.244
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
2593.445
|
2766.118
|
3170.986
|
1709.907
|
1412.335
|
2298.538
|
2195.986
|
5539.901
|
3721.059
|
1395.361
|
2392.089
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.831
|
-0.781
|
-0.308
|
0.717
|
— |
1.165
|
-1.192
|
— | — | — | — | — |
No JSON data available for plots.