Hg_chrom4_TN10mRNA_7939
Organism: Heterodera glycines Gene Locus: chr4:5720581-5732456 Feature type: polypeptideProtein Sequence
Length: 1,458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 1.483 | 0.636 | 0.26 | 0.972 | 2.497 | 0.612 | 1.132 | 0.488 | 0.816 | 0.883 | 0.524 | 1.105 | 2.044 | 1.33 | 1.754 | 0.9 | 0.509 | 0.211 | 0.585 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7474
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRGRS,RKPSERSLFNRRNKD,KKSKSFTDSTEKKKNT
|
14-37
|
0.771
|
— | — | — | — |
0.000
|
— | — |
0.423
|
0.080
|
0.011
|
0.698
|
0.098
|
0.063
|
0.059
|
0.032
|
0.092
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000850
|
1.000
|
5.000
|
Hsc_gene_10379.t1;Hsc_gene_10379.t2;Hsc_gene_10379.t3;Hsc_gene_10379.t4;Hsc_gene_10379.t5
|
— | — |
P48634.3 Protein PRRC2A [Homo sapiens]
|
KAF7634300.1 BAT2_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.696|GO:0005575_0.627|GO:0110165_0.626|GO:0003674_0.611|GO:0005488_0.611|GO:0016020_0.571|GO:0005622_0.568|GO:0003676_0.538|GO:0097159_0.538|GO:0009987_0.524
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
109-1458
|
1.000
|
1-108
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
161403.030
|
10.170
|
60.500
|
23.937
|
8.505
|
57.819
|
42.181
|
14.609
|
9.328
|
54.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1760.801
|
2276.954
|
1899.939
|
1614.000
|
1599.902
|
1724.675
|
1833.053
|
1478.750
|
1680.373
|
1782.995
|
1739.014
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.490
|
-0.634
|
-0.127
|
— |
0.123
|
— |
-0.327
|
0.452
|
— | — | — | — | — |
No JSON data available for plots.