SCN Proteipedia

Hg_chrom4_TN10mRNA_7941

Organism: Heterodera glycines Gene Locus: chr4:5739744-5744533 Feature type: polypeptide

Protein Sequence

Length: 862

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.025	0.944	1.034	0.64	1.16	1.101	0.47	1.798	1.237	1.724	0.879	1.365	1.353	0.558	1.231	1.094	0.742	0.527	0.803	1.126	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7476	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKYALEAVKGSSLERMVKR	—	—	—	—	—	—	0.000	—	—	0.868	0.110	0.007	0.435	0.113	0.023	0.049	0.020	0.038	0.008

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008640	1.000	1.000	Hsc_gene_10381.t1	Hsc_gene_10381.t1	—	Q9Y5Q9.1 General transcription factor 3C polypeptide 3 [Homo sapiens]	KAI1707885.1 tetratricopeptide repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0005515\|GO:0006383	GO:0008150_0.957\|GO:0009987_0.903\|GO:0005575_0.893\|GO:0110165_0.893\|GO:0005622_0.825\|GO:0016020_0.823\|GO:0008152_0.793\|GO:0044238_0.780\|GO:0043226_0.768\|GO:0009058_0.765\|GO:0044237_0.763\|GO:0043170_0.757\|GO:0005737_0.750\|GO:0043229_0.747\|GO:0044249_0.743\|GO:0003674_0.739\|GO:0009059_0.731\|GO:0043227_0.725\|GO:0006139_0.714\|GO:0010467_0.711\|GO:0034654_0.703\|GO:0090304_0.703\|GO:0043231_0.702\|GO:0141187_0.698\|GO:0016070_0.696\|GO:0032774_0.694\|GO:0006351_0.684\|GO:0006383_0.670\|GO:0032991_0.639\|GO:0005634_0.596\|GO:0071944_0.556\|GO:0005886_0.546\|GO:0000127_0.540\|GO:0005667_0.540\|GO:0009303_0.540\|GO:0016072_0.540\|GO:0042791_0.540\|GO:0090576_0.540\|GO:0000995_0.531\|GO:0140223_0.531	IPR011990+60-249_77-465_331-862+\|IPR019734+145-178_369-402_406-439_407-438_776-809_777-807+\|IPR039340+46-862+	SM00028+145-178_369-402_406-439_776-809+	PF13181+407-438_777-807+Tetratricopeptide_repeat	—	PTHR23082+46-862+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-84	1.000	85-862	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.501	98749.900	6.986	8.500	28.074	13.341	48.608	51.392	15.429	12.645	42.923

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1601.261	2819.463	1761.029	1807.844	2004.456	1747.011	1875.383	2034.012	1195.333	840.567	992.610

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.908	-0.778	0.146	0.117	-0.184	—	—	—	—	—	—	—	—

No JSON data available for plots.

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