Hg_chrom4_TN10mRNA_7942
Organism: Heterodera glycines Gene Locus: chr4:5745470-5751409 Feature type: polypeptideProtein Sequence
Length: 932
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 1.223 | 0.858 | 0.777 | 1.323 | 1.238 | 0.69 | 1.127 | 1.407 | 1.682 | 0.927 | 0.82 | 1.341 | 0.619 | 0.92 | 1.242 | 0.704 | 0.797 | 0.908 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7477
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KKNLFDLAISIARRGKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.419
|
0.108
|
0.012
|
0.430
|
0.175
|
0.586
|
0.298
|
0.012
|
0.048
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008641
|
1.000
|
1.000
|
Hsc_gene_10382.t1
|
Hsc_gene_10382.t1
|
— |
Q09600.2 Vacuolar protein sorting-associated protein 11 homolog [Caenorhabditis elegans]
|
KAI6222786.1 Vacuolar protein sorting-associated protein 11-like protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0016192
|
GO:0005575_0.934|GO:0110165_0.926|GO:0005622_0.861|GO:0005737_0.787|GO:0016020_0.783|GO:0043226_0.749|GO:0043229_0.726|GO:0071944_0.715|GO:0005886_0.705|GO:0008150_0.699|GO:0043227_0.688|GO:0043231_0.662|GO:0009987_0.653|GO:0032991_0.604|GO:0005773_0.577|GO:0012505_0.565|GO:0016043_0.534|GO:0031982_0.534|GO:0071840_0.534|GO:0097708_0.510|GO:0031410_0.509
|
IPR000547+426-577+|IPR001841+817-856+|IPR013083+774-872+|IPR019453+742-842+
|
— |
PF10367+742-842+Vacuolar_sorting_protein_39_domain_2
|
— |
PTHR23323+10-875+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
902-932
|
1.000
|
1-901
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
105001.850
|
5.839
|
-8.500
|
25.536
|
10.837
|
48.605
|
51.395
|
12.876
|
12.661
|
45.601
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
2055.610
|
4186.653
|
2315.975
|
2074.262
|
2182.840
|
2114.999
|
1981.652
|
2687.125
|
1518.546
|
1275.571
|
1379.703
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.084
|
-1.150
|
— | — | — | — |
0.241
|
-0.298
|
— | — | — | — | — |
No JSON data available for plots.