SCN Proteipedia

Hg_chrom4_TN10mRNA_7943

Organism: Heterodera glycines Gene Locus: chr4:5751442-5754516 Feature type: polypeptide

Protein Sequence

Length: 695

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.736	0.97	1.099	0.397	2.566	0.812	0.839	1.151	0.671	0.758	1.591	0.931	0.56	0.719	1.821	0.843	0.755	0.567	0.885	1.058	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7478	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKSK,RKKYSKELKEAIKRQVK,KKRVKRSEKRRRHKEKLR,KRIRDDKKRVKRSEKRRRH,KRVKRSEKRRRHKEKLRLR,KRRRHKEKLRLREGEKERK,RRRHKEKLRLREGEKERKR,RRHKEKLRLREGEKERKRN,KKYSKELKEAIKRQVKQKTEGRELLEKGDRKRK	—	—	—	—	—	—	0.000	—	—	0.842	0.040	0.020	0.324	0.069	0.021	0.088	0.018	0.049	0.073

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008642	1.000	1.000	Hsc_gene_10383.t1	Hsc_gene_10383.t1;Hsc_gene_6429.t1	—	Q21278.1 Pre-mRNA-splicing factor SLU7 [Caenorhabditis elegans]	KAI6223993.1 Pre-mRNA-splicing factor SLU7 [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0003676\|GO:0008270\|GO:0030628	GO:0008150_0.944\|GO:0009987_0.912\|GO:0008152_0.818\|GO:0043170_0.818\|GO:0009058_0.804\|GO:0009059_0.804\|GO:0044237_0.804\|GO:0044249_0.804\|GO:0044238_0.803\|GO:0006139_0.802\|GO:0010467_0.801\|GO:0090304_0.795\|GO:0034654_0.781\|GO:0141187_0.781\|GO:0016070_0.774\|GO:0032774_0.766\|GO:0003674_0.761\|GO:0005488_0.759\|GO:0006396_0.721\|GO:0008380_0.693\|GO:0005575_0.676\|GO:0110165_0.676\|GO:0005622_0.669\|GO:0097159_0.664\|GO:0003676_0.658\|GO:0003723_0.647\|GO:0043226_0.618\|GO:0043229_0.610\|GO:0016020_0.592\|GO:0043227_0.543\|GO:0005634_0.533\|GO:0043231_0.533	IPR001878+121-134+\|IPR021715+162-412+\|IPR039974+30-548+	—	PF11708+162-412+Pre-mRNA_splicing_Prp18-interacting_factor	—	PTHR12942+30-548+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-110;190-239;440-695	2.000	111-189;240-439	9fmd_U	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.501	80548.000	5.978	-6.000	43.165	9.065	61.007	38.993	21.727	21.439	42.734

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2985.481	6952.123	2429.290	2285.018	2770.274	2391.893	2097.328	2244.139	3897.237	2199.776	2927.259

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.748	-1.742	—	0.246	-0.197	—	—	—	—	—	—	—	—

No JSON data available for plots.

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