Hg_chrom4_TN10mRNA_7945
Organism: Heterodera glycines Gene Locus: chr4:5759858-5761548 Feature type: polypeptideProtein Sequence
Length: 286
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.651 | 0.894 | 1.526 | 0.723 | 1.049 | 0.448 | 0.5 | 1.573 | 1.243 | 1.559 | 1.007 | 2.674 | 1.651 | 0.874 | 1.356 | 0.999 | 0.573 | 0.795 | 0.269 | 0.926 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7480
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.413
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.500
|
0.321
|
0.068
|
0.586
|
0.057
|
0.094
|
0.092
|
0.036
|
0.066
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008643
|
1.000
|
1.000
|
Hsc_gene_10386.t1
|
Hsc_gene_10386.t1
|
— | — |
KAF7634287.1 RNase_Zc3h12a domain-containing protein [Meloidogyne graminicola]
|
MCH4062977
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.938|GO:0009987_0.875|GO:0065007_0.810|GO:0050789_0.798|GO:0050896_0.780|GO:0051716_0.755|GO:0048519_0.724|GO:0009628_0.700|GO:0009314_0.680|GO:0009416_0.680|GO:0071214_0.679|GO:0104004_0.679|GO:0009411_0.674|GO:0071478_0.674|GO:0034644_0.670|GO:0071482_0.670|GO:0005575_0.581|GO:0110165_0.576|GO:0005622_0.560|GO:0003674_0.558|GO:0016020_0.530
|
IPR021869+37-172+
|
— |
PF11977+37-172+Zc3h12a-like_Ribonuclease_NYN_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-286
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.496
|
32987.110
|
6.582
|
0.500
|
31.119
|
12.587
|
47.203
|
52.797
|
16.434
|
14.685
|
44.406
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
598.579
|
518.773
|
427.521
|
427.731
|
463.159
|
352.303
|
621.114
|
362.478
|
1079.514
|
619.241
|
816.501
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.508
|
-0.415
|
— | — |
-0.380
|
0.829
|
— |
0.919
|
— | — | — | — | — |
No JSON data available for plots.