SCN Proteipedia

Hg_chrom4_TN10mRNA_7946

Organism: Heterodera glycines Gene Locus: chr4:5761999-5765828 Feature type: polypeptide

Protein Sequence

Length: 862 (Signal peptide: 1-29)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.715	1.133	0.633	1.04	1.392	0.744	0.691	1.74	0.98	1.474	0.686	0.887	1.515	0.937	1.444	1.293	0.723	0.914	1.517	0.512	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7481	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.507

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	cell_membrane	nucleus	EKKMKGRRGWR,KRTELAEHSEGIEQRDARK,KRISAEEALGTLKDIRRKE	—	—	—	—	1-29	—	1.000	—	1.000	0.145	0.075	0.009	0.285	0.241	0.408	0.285	0.091	0.840	0.096

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003790	2.000	1.000	Hsc_gene_10387.t1	Hsc_gene_10387.t1	—	P00529.1 Tyrosine-protein kinase transforming protein ros [UR2 sarcoma virus]	KAF7634284.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005524\|GO:0006468	GO:0008150_0.943\|GO:0005575_0.858\|GO:0009987_0.841\|GO:0110165_0.830\|GO:0065007_0.798\|GO:0050789_0.780\|GO:0050896_0.770\|GO:0050794_0.751\|GO:0003674_0.750\|GO:0016020_0.729\|GO:0051716_0.720\|GO:0071944_0.720\|GO:0007154_0.716\|GO:0023052_0.716\|GO:0005886_0.708\|GO:0007165_0.646\|GO:0032501_0.629\|GO:0032502_0.621\|GO:0048856_0.621\|GO:0003824_0.617\|GO:0005622_0.604\|GO:0008152_0.601\|GO:0005488_0.599\|GO:0005515_0.599\|GO:0043170_0.590\|GO:0044238_0.589\|GO:0140096_0.589\|GO:0016740_0.588\|GO:0048518_0.586\|GO:0044237_0.582\|GO:0048522_0.571\|GO:0071840_0.536\|GO:0016043_0.535\|GO:0016772_0.529\|GO:0007166_0.524\|GO:0016773_0.518\|GO:0004672_0.516\|GO:0016301_0.516\|GO:0007275_0.505\|GO:0019538_0.502	IPR000719+546-850+\|IPR001245+546-842_644-657_754-764_773-795_818-840+\|IPR008266+697-709+\|IPR011009+520-845+\|IPR020635+546-847+\|IPR050122+240-847+	SM00219+546-847+	PF07714+546-842+Protein_tyrosine_and_serine/threonine_kinase	—	PTHR24416+240-847+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;860-862	1.000	2-859	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.755	97745.460	7.316	13.000	26.914	12.645	48.144	51.856	15.081	11.833	47.680

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	414.335	1181.141	1223.875	465.672	103.752	58.279	53.556	408.467	119.196	412.791	286.965

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.178	-1.480	-1.285	-2.196	-0.818	—	2.708	-2.790	—	—	—	—	—

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