Hg_chrom4_TN10mRNA_7949
Organism: Heterodera glycines Gene Locus: chr4:5777461-5780541 Feature type: polypeptideProtein Sequence
Length: 392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 1.127 | 0.835 | 1.056 | 1.063 | 0.72 | 0.881 | 1.786 | 1.304 | 1.0 | 0.812 | 1.501 | 1.559 | 0.638 | 1.041 | 1.13 | 0.962 | 1.237 | 1.177 | 0.9 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7484
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKSDFCLVAPTKELRKCIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.702
|
0.100
|
0.007
|
0.464
|
0.185
|
0.235
|
0.133
|
0.013
|
0.102
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008646
|
1.000
|
1.000
|
Hsc_gene_10390.t3
|
Hsc_gene_10390.t1;Hsc_gene_10390.t2;Hsc_gene_10390.t3
|
— |
Q24338.1 Polycomb protein esc [Drosophila melanogaster]
|
KAI1714175.1 polycomb protein EED [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.828|GO:0005575_0.811|GO:0110165_0.808|GO:0005622_0.734|GO:0009987_0.690|GO:0016020_0.654|GO:0043226_0.643|GO:0043229_0.624|GO:0043227_0.599|GO:0043231_0.579|GO:0065007_0.536|GO:0050789_0.517
|
IPR001680+16-60_115-155_121-155_122-164_158-200_168-209_169-199_228-265_278-326_304-335_334-377_351-372+|IPR015943+9-378+|IPR019775+142-156+|IPR020472+142-156_187-201_313-327+|IPR036322+25-379+|IPR051243+9-376+
|
SM00320+16-60_115-155_158-200_228-265_278-326_334-377+
|
PF00400+121-155_169-199_351-372+WD_domain,_G-beta_repeat
|
— |
PTHR10253+9-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
392-392
|
1.000
|
1-391
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
44055.290
|
7.113
|
5.000
|
25.000
|
13.776
|
46.429
|
53.571
|
14.031
|
10.969
|
50.765
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
2533.808
|
5160.552
|
3666.816
|
2920.418
|
2482.035
|
2305.853
|
2528.233
|
3291.194
|
1564.841
|
1528.615
|
1544.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.723
|
-0.958
|
-0.219
|
-0.267
|
— |
0.143
|
0.408
|
-0.238
|
— | — | — | — | — |
No JSON data available for plots.