Hg_chrom4_TN10mRNA_7952
Organism: Heterodera glycines Gene Locus: chr4:5788387-5790297 Feature type: polypeptideProtein Sequence
Length: 331
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.475 | 0.879 | 0.313 | 1.259 | 0.93 | 0.647 | 2.115 | 1.746 | 1.021 | 1.282 | 0.889 | 1.511 | 1.104 | 0.678 | 0.993 | 0.792 | 0.732 | 2.092 | 0.711 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7487
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
2-22
|
0.972
|
17-44
|
0.984
|
— | — |
0.000
|
— | — |
0.152
|
0.941
|
0.051
|
0.390
|
0.078
|
0.125
|
0.177
|
0.065
|
0.048
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008649
|
1.000
|
1.000
|
Hsc_gene_10393.t1
|
Hsc_gene_10393.t1
|
— |
Q18680.5 Inorganic pyrophosphatase 1 [Caenorhabditis elegans]
|
AVA09638.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0004427|GO:0005737|GO:0006796
|
GO:0005575_0.830|GO:0110165_0.830|GO:0005622_0.727|GO:0005737_0.685|GO:0016020_0.638|GO:0043226_0.632|GO:0043227_0.596|GO:0043229_0.583|GO:0043231_0.554|GO:0003674_0.534|GO:0008150_0.501
|
IPR008162+42-272_86-267_88-270+|IPR036649+43-329_44-325+
|
— |
PF00719+88-270+Inorganic_pyrophosphatase
|
G3DSA:3.90.80.10:FF:000009+43-328+Inorganic_pyrophosphatase
|
PTHR10286+42-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
331-331
|
1.000
|
1-330
|
2ihp_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
37973.170
|
7.175
|
5.000
|
28.399
|
14.804
|
50.151
|
49.849
|
16.012
|
12.387
|
45.317
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2884.648
|
1114.919
|
1789.343
|
4042.244
|
5511.198
|
4152.676
|
2663.678
|
1902.952
|
2418.393
|
2865.161
|
2673.689
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.454
|
1.721
|
1.284
|
0.415
|
-0.393
|
-0.631
|
-1.230
|
0.627
|
— | — | — | — | — |
No JSON data available for plots.