Hg_chrom4_TN10mRNA_7955
Organism: Heterodera glycines Gene Locus: chr4:5800895-5803177 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.981 | 1.345 | 1.051 | 1.828 | 1.245 | 1.112 | 0.66 | 1.446 | 0.91 | 0.879 | 0.986 | 0.85 | 1.004 | 1.251 | 1.18 | 1.205 | 0.751 | 0.511 | 0.185 | 0.992 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7489
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PPKSLKSRKIANKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.928
|
0.113
|
0.011
|
0.271
|
0.021
|
0.042
|
0.036
|
0.010
|
0.032
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008650
|
1.000
|
1.000
|
Hsc_gene_10395.t1
|
Hsc_gene_10395.t1
|
— |
Q95QD7.1 Protein lin-54 [Caenorhabditis elegans]
|
KAF7637899.1 CRC domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.899|GO:0009987_0.730|GO:0005575_0.725|GO:0110165_0.721|GO:0003674_0.712|GO:0005488_0.703|GO:0005622_0.674|GO:0065007_0.661|GO:0050789_0.659|GO:0016020_0.624|GO:0043226_0.615|GO:0043229_0.607|GO:0032502_0.582|GO:0097159_0.575|GO:0003676_0.570|GO:0043227_0.559|GO:0043231_0.550|GO:0003677_0.541|GO:0005634_0.540|GO:0032501_0.532|GO:0048856_0.524|GO:0050794_0.524
|
IPR005172+161-279_163-197_242-278+|IPR028307+98-396+|IPR033467+160-200_239-280+
|
SM01114+160-200_239-280+
|
PF03638+163-197_242-278+Tesmin/TSO1-like_CXC_domain,_cysteine-rich_domain
|
— |
PTHR12446+98-396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-69;403-415
|
1.000
|
70-402
|
5fd3_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
46174.700
|
6.734
|
2.000
|
28.434
|
10.120
|
51.566
|
48.434
|
15.181
|
13.253
|
53.735
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
1190.623
|
1743.222
|
1220.908
|
1322.367
|
1247.355
|
986.933
|
1052.712
|
1214.989
|
706.843
|
1383.162
|
1093.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.743
|
-0.536
|
0.224
|
-0.116
|
-0.323
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.