SCN Proteipedia

Hg_chrom4_TN10mRNA_7957

Organism: Heterodera glycines Gene Locus: chr4:5805233-5808953 Feature type: polypeptide

Protein Sequence

Length: 752

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.113	0.897	0.725	0.321	1.285	1.875	0.95	0.997	0.946	0.952	1.028	1.173	0.628	2.046	1.411	0.95	0.61	0.584	0.716	0.469	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7491	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKSR,AKHRNRSHSKSPSKKHRKRLSRSPEKKKHKKRSRSRESKHRKRDKSREAKRVK	—	—	—	—	—	—	0.000	—	—	0.862	0.023	0.008	0.121	0.092	0.026	0.080	0.003	0.065	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008651	1.000	1.000	Hsc_gene_10397.t1	Hsc_gene_10397.t1;Hsc_gene_10397.t2;Hsc_gene_10397.t3	—	Q64213.6 Splicing factor 1 [Mus musculus]	KAF7637897.1 CCHC-type domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0008270	GO:0008150_0.905\|GO:0005575_0.852\|GO:0110165_0.852\|GO:0009987_0.850\|GO:0005622_0.814\|GO:0043226_0.792\|GO:0043229_0.781\|GO:0016020_0.774\|GO:0003674_0.740\|GO:0005488_0.740\|GO:0043227_0.703\|GO:0008152_0.681\|GO:0009058_0.681\|GO:0003676_0.680\|GO:0097159_0.680\|GO:0044238_0.679\|GO:0043231_0.678\|GO:0005634_0.673\|GO:0065007_0.671\|GO:0050789_0.668\|GO:0009059_0.634\|GO:0010467_0.634\|GO:0043170_0.634\|GO:0044237_0.634\|GO:0044249_0.634\|GO:0006139_0.614\|GO:0016070_0.614\|GO:0090304_0.614\|GO:0034654_0.575\|GO:0141187_0.575\|GO:0032774_0.574\|GO:0019222_0.573\|GO:0080090_0.571\|GO:0050794_0.563\|GO:0003723_0.552\|GO:0009889_0.548	IPR001878+524-540_549-565_550-565+\|IPR004087+395-487+\|IPR004088+412-439+\|IPR032570+283-391+\|IPR036612+393-515_397-518+\|IPR036875+521-567+\|IPR045071+260-726+\|IPR047086+305-387+	SM00322+395-487+\|SM00343+524-540_549-565+	PF00013+412-439+KH_domain\|PF00098+549-565+Zinc_knuckle\|PF16275+283-391+Splicing_factor_1_helix-hairpin_domain	G3DSA:3.30.1370.10:FF:000126+392-519+Protein_CBR-SFA-1	PTHR11208+260-726+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-387;589-752	1.000	388-588	7vpx_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.937	82473.150	9.712	22.500	27.394	6.782	48.936	51.064	15.691	11.702	51.197

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	4674.759	7061.907	7105.623	6721.644	5924.443	5163.723	4136.984	5165.298	3995.402	1975.662	2841.265

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.220	-0.208	—	-0.214	-0.184	-0.309	—	—	—	—	—	—	—

No JSON data available for plots.

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