Hg_chrom4_TN10mRNA_7958
Organism: Heterodera glycines Gene Locus: chr4:5809248-5809551 Feature type: polypeptideProtein Sequence
Length: 70
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.498 | 1.661 | 0.519 | 0.0 | 0.714 | 1.099 | 1.02 | 0.714 | 1.587 | 1.931 | 0.433 | 2.521 | 2.381 | 0.549 | 1.166 | 0.408 | 1.405 | 0.866 | 1.099 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7492
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.641
|
0.322
|
0.014
|
0.466
|
0.053
|
0.090
|
0.153
|
0.072
|
0.024
|
0.305
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_10397.t2
|
— |
Q4G338.1 Peptidyl-prolyl cis-trans isomerase E [Haemonchus contortus]
|
KAH7694540.1 cyclophilin-type peptidyl-prolyl cis-trans isomerase-13, partial [Aphelenchus avenae]
|
No
|
0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0008150_0.925|GO:0005575_0.914|GO:0110165_0.913|GO:0009987_0.860|GO:0016020_0.800|GO:0005622_0.774|GO:0043226_0.727|GO:0043229_0.726|GO:0008152_0.715|GO:0044237_0.711|GO:0009058_0.710|GO:0043170_0.706|GO:0043227_0.705|GO:0043231_0.705|GO:0044238_0.704|GO:0044249_0.704|GO:0009059_0.703|GO:0010467_0.697|GO:0003674_0.573|GO:0005634_0.559|GO:0005488_0.544
|
IPR035979+5-47+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-70
|
8ro0_y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
8022.380
|
8.621
|
1.500
|
17.143
|
14.286
|
40.000
|
60.000
|
10.000
|
7.143
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
609.052
|
861.540
|
649.554
|
588.712
|
563.608
|
490.608
|
282.793
|
563.894
|
238.584
|
985.398
|
665.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.637
|
-0.686
|
— | — | — |
-0.786
|
— |
-0.856
|
— | — | — | — | — |
No JSON data available for plots.