Hg_chrom4_TN10mRNA_7960
Organism: Heterodera glycines Gene Locus: chr4:5811341-5814200 Feature type: polypeptideProtein Sequence
Length: 560
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.81 | 1.287 | 0.747 | 0.493 | 1.22 | 1.511 | 0.51 | 0.804 | 1.23 | 1.665 | 0.866 | 1.576 | 1.29 | 0.652 | 1.239 | 1.071 | 0.82 | 0.974 | 0.137 | 0.998 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7493
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— |
KKPTIRYQKTSRDAKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.296
|
0.163
|
0.064
|
0.554
|
0.220
|
0.680
|
0.507
|
0.022
|
0.100
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003852
|
2.000
|
1.000
|
Hsc_gene_10398.t1
|
Hsc_gene_10398.t1
|
— |
O08700.1 Vacuolar protein sorting-associated protein 45 [Rattus norvegicus]
|
KAI1707895.1 sec1 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016192
|
GO:0005575_0.911|GO:0110165_0.911|GO:0005622_0.820|GO:0016020_0.820|GO:0005737_0.747|GO:0043226_0.735|GO:0043229_0.720|GO:0043227_0.690|GO:0043231_0.670|GO:0071944_0.656|GO:0005886_0.645|GO:0008150_0.580|GO:0009987_0.521|GO:0005773_0.502
|
IPR001619+1-557_3-554_23-553+|IPR027482+146-525+|IPR036045+1-553+|IPR043127+230-341+|IPR043154+3-127+
|
— |
PF00995+23-553+Sec1_family
|
G3DSA:3.90.830.10:FF:000002+230-341+Vacuolar_protein_sorting-associated_protein_45
|
PTHR11679+3-554+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-560
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
63636.160
|
7.872
|
6.500
|
24.821
|
9.821
|
48.750
|
51.250
|
13.393
|
11.429
|
44.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1447.895
|
2154.364
|
1466.868
|
1389.041
|
1361.196
|
1213.055
|
1218.636
|
1747.127
|
1281.940
|
1416.730
|
1358.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.784
|
-0.770
|
— | — |
-0.151
|
— |
0.421
|
-0.378
|
— | — | — | — | — |
No JSON data available for plots.