SCN Proteipedia

Hg_chrom4_TN10mRNA_7961

Organism: Heterodera glycines Gene Locus: chr4:5814356-5817877 Feature type: polypeptide

Protein Sequence

Length: 851

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.833	1.175	1.068	0.486	1.156	1.657	0.602	0.646	0.992	0.953	0.926	1.106	0.816	0.881	1.847	1.595	0.925	0.641	0.994	0.691	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7494	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKL,RKRERSRTPFSRRRSP,EKKKKKKRPLEEEKPKT,KRRCRHSRQSPPPRKRERS,RRCRHSRQSPPPRKRERSR	43-63	0.961	—	—	—	—	0.000	—	—	0.881	0.044	0.011	0.209	0.102	0.017	0.037	0.005	0.041	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008652	1.000	1.000	Hsc_gene_10399.t1	Hsc_gene_10399.t1	—	F4JCU0.2 SUPPRESSOR OF ABI3-5 [Arabidopsis thaliana]	KAI6227287.1 G-patch domain protein [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.811\|GO:0110165_0.808\|GO:0008150_0.803\|GO:0009987_0.770\|GO:0005622_0.748\|GO:0043226_0.703\|GO:0016020_0.693\|GO:0043229_0.681\|GO:0065007_0.656\|GO:0050789_0.642\|GO:0050794_0.626\|GO:0043227_0.619\|GO:0008152_0.608\|GO:0043170_0.608\|GO:0009058_0.587\|GO:0009059_0.587\|GO:0044237_0.587\|GO:0044249_0.587\|GO:0043231_0.586\|GO:0010467_0.585\|GO:0003674_0.579\|GO:0005488_0.579\|GO:0005634_0.553\|GO:0006139_0.553\|GO:0044238_0.553\|GO:0090304_0.552\|GO:0034654_0.537\|GO:0016070_0.535\|GO:0141187_0.533\|GO:0032774_0.530	IPR000467+773-819_775-821_776-818+\|IPR000504+88-170_89-166_91-153_229-305_230-301_231-288+\|IPR001876+182-211_184-208_185-211_186-205+\|IPR012677+68-177_224-310+\|IPR013087+676-706+\|IPR035979+85-289+\|IPR036443+183-211+\|IPR041591+388-435+	SM00360+89-166_230-301+\|SM00443+773-819+\|SM00547+184-208+	PF00076+91-153_231-288+RNA_recognition_motif\|PF00641+185-211+Zn-finger_in_Ran_binding_protein_and_others\|PF01585+776-818+G-patch_domain\|PF17780+388-435+OCRE_domain	—	PTHR13948+5-843+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-101;442-851	1.000	102-441	5mfy_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.899	96232.440	9.595	25.500	29.260	7.873	57.579	42.421	16.451	12.808	50.176

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	2793.678	5040.726	2797.526	2321.412	2318.676	2049.593	2111.098	2972.027	3392.435	2323.869	2781.826

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.079	-1.256	-0.160	—	-0.163	—	0.433	-0.352	—	—	—	—	—

No JSON data available for plots.

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