Hg_chrom4_TN10mRNA_7962
Organism: Heterodera glycines Gene Locus: chr4:5818245-5819895 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.567 | 0.972 | 1.014 | 0.0 | 1.742 | 1.876 | 0.332 | 1.045 | 1.703 | 1.083 | 1.689 | 1.845 | 1.065 | 0.737 | 1.849 | 0.796 | 0.685 | 0.475 | 0.268 | 0.82 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7495
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRHFQLEEETRKRTKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.183
|
0.961
|
0.076
|
0.152
|
0.017
|
0.015
|
0.023
|
0.060
|
0.083
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008653
|
1.000
|
1.000
|
Hsc_gene_10400.t1
|
Hsc_gene_10400.t1
|
— |
Q17439.1 Uncharacterized protein B0035.15 [Caenorhabditis elegans]
|
KAF7637896.1 hypothetical protein Mgra_00002601 [Meloidogyne graminicola]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032981
|
GO:0005575_0.928|GO:0110165_0.925|GO:0005622_0.923|GO:0043226_0.881|GO:0043229_0.876|GO:0016020_0.860|GO:0005737_0.814|GO:0043227_0.811|GO:0043231_0.797|GO:0005739_0.574
|
IPR009622+23-180_26-131+
|
— |
PF06784+26-131+Uncharacterised_protein_family_(UPF0240)
|
— |
PTHR13338+23-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
276-287
|
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
34180.160
|
10.199
|
15.000
|
38.328
|
9.059
|
59.582
|
40.418
|
22.300
|
16.028
|
34.146
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1433.189
|
1218.005
|
1035.478
|
1136.851
|
1163.541
|
930.298
|
911.303
|
858.350
|
3176.681
|
1167.507
|
2028.582
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.465
|
-0.236
|
0.244
|
— |
-0.308
|
— |
-0.222
|
0.229
|
— | — | — | — | — |
No JSON data available for plots.