Hg_chrom4_TN10mRNA_7965
Organism: Heterodera glycines Gene Locus: chr4:5822282-5826496 Feature type: polypeptideProtein Sequence
Length: 963
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.942 | 1.063 | 0.793 | 0.609 | 1.263 | 1.358 | 0.346 | 1.142 | 1.5 | 1.712 | 0.566 | 1.344 | 1.558 | 0.859 | 1.187 | 0.979 | 0.732 | 0.96 | 0.559 | 1.008 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7496
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRDIEGSDLETRRRGA
|
31-70
|
0.949
|
— | — | — | — |
0.000
|
— | — |
0.708
|
0.068
|
0.013
|
0.567
|
0.192
|
0.170
|
0.187
|
0.028
|
0.119
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003853
|
2.000
|
1.000
|
Hsc_gene_10402.t1
|
Hsc_gene_10402.t1
|
— |
P55060.3 Exportin-2 [Homo sapiens]
|
KAF7637895.1 Importin N-terminal domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006886|GO:0031267
|
GO:0005575_0.803|GO:0110165_0.789|GO:0008150_0.659|GO:0005622_0.640|GO:0016020_0.634|GO:0005737_0.582|GO:0043226_0.552|GO:0043229_0.539|GO:0043227_0.516
|
IPR001494+26-98+|IPR005043+521-941+|IPR011989+6-962+|IPR013713+137-520+|IPR016024+1-878+
|
SM00913+26-98+
|
PF03378+521-941+CAS/CSE_protein,_C-terminus|PF03810+26-98+Importin-beta_N-terminal_domain|PF08506+137-520+Cse1
|
— |
PTHR10997+7-896+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-963
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.598
|
110105.900
|
5.565
|
-12.000
|
23.780
|
12.046
|
44.964
|
55.036
|
11.838
|
11.942
|
43.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkturquoise
|
3598.501
|
4246.600
|
3887.977
|
4359.271
|
4464.927
|
3398.479
|
4203.518
|
3543.365
|
2391.802
|
3410.538
|
2973.937
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.357
|
-0.099
|
0.274
|
— |
-0.379
|
0.316
|
— |
0.388
|
— |
1.019
|
— | — | — |
No JSON data available for plots.