Hg_chrom4_TN10mRNA_7966
Organism: Heterodera glycines Gene Locus: chr4:5826702-5833692 Feature type: polypeptideProtein Sequence
Length: 946
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.032 | 0.884 | 0.656 | 0.775 | 0.759 | 0.692 | 1.057 | 1.222 | 1.4 | 0.593 | 1.928 | 2.261 | 1.077 | 1.143 | 0.951 | 0.797 | 1.073 | 1.22 | 1.026 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7497
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RKSK
|
5-25
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.119
|
0.076
|
0.007
|
0.106
|
0.407
|
0.613
|
0.457
|
0.007
|
0.608
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008655
|
1.000
|
1.000
|
Hsc_gene_10403.t1
|
Hsc_gene_10403.t1
|
— |
Q9XWL9.3 Patched-related protein 18 [Caenorhabditis elegans]
|
KAI1727238.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.842|GO:0110165_0.828|GO:0008150_0.793|GO:0016020_0.775|GO:0071944_0.764|GO:0005886_0.759|GO:0009987_0.621|GO:0005622_0.520|GO:0043226_0.514
|
IPR000731+346-502+|IPR003392+161-930+|IPR051697+30-935+
|
— |
PF02460+161-930+Patched_family
|
— |
PTHR10796+30-935+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
104-162
|
2.000
|
1-103;163-946
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
107441.420
|
7.452
|
10.000
|
21.142
|
15.328
|
40.063
|
59.937
|
11.628
|
9.514
|
48.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
1078.241
|
1505.070
|
287.277
|
247.211
|
2903.701
|
3997.501
|
1011.824
|
855.398
|
44.818
|
630.696
|
379.606
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.619
|
-2.743
|
— |
3.522
|
0.478
|
-1.972
|
-2.343
|
— |
-3.931
|
— | — | — | — |
No JSON data available for plots.