Hg_chrom4_TN10mRNA_7969
Organism: Heterodera glycines Gene Locus: chr4:5837042-5837773 Feature type: polypeptideProtein Sequence
Length: 141
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.66 | 0.66 | 1.418 | 0.734 | 0.946 | 0.727 | 0.591 | 0.709 | 0.946 | 1.725 | 0.537 | 2.92 | 0.985 | 0.818 | 1.158 | 1.925 | 0.93 | 0.967 | 0.546 | 0.417 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7499
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.931
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.323
|
0.145
|
0.075
|
0.546
|
0.180
|
0.553
|
0.379
|
0.185
|
0.217
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003854
|
2.000
|
1.000
|
Hsc_gene_10405.t1
|
— | — |
Q66H43.2 BLOC-1-related complex subunit 6 [Rattus norvegicus]
|
KAH7708948.1 Protein Y37E11B.3 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.921|GO:0005575_0.913|GO:0003674_0.786|GO:0005488_0.766|GO:0005515_0.763|GO:0051179_0.739|GO:0051640_0.679|GO:0042802_0.672|GO:0032418_0.670|GO:1990849_0.670|GO:0032991_0.657|GO:0140535_0.562|GO:0099078_0.540
|
IPR019314+11-133+|IPR046465+20-133+
|
— |
PF10157+20-133+BLOC-1-related_complex_sub-unit_6_C-terminal_helix
|
— |
PTHR13440+11-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-141
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
15548.760
|
4.575
|
-5.000
|
24.113
|
7.092
|
48.936
|
51.064
|
10.638
|
13.475
|
53.191
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
767.732
|
318.172
|
288.900
|
368.541
|
213.970
|
333.760
|
164.024
|
788.099
|
1452.765
|
1340.955
|
1388.873
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.370
|
— |
0.461
|
-0.817
|
0.656
|
-1.014
|
1.127
|
-2.117
|
— | — |
-2.494
|
— | — |
No JSON data available for plots.