Hg_chrom4_TN10mRNA_7972
Organism: Heterodera glycines Gene Locus: chr4:5845642-5847882 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 1.265 | 0.903 | 1.141 | 1.182 | 0.97 | 0.788 | 0.946 | 1.103 | 1.47 | 0.788 | 0.695 | 1.445 | 0.636 | 1.544 | 1.148 | 1.085 | 0.895 | 1.091 | 0.209 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7502
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
FKRR,KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.812
|
0.231
|
0.056
|
0.218
|
0.057
|
0.050
|
0.096
|
0.012
|
0.055
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008659
|
1.000
|
1.000
|
Hsc_gene_10409.t2
|
Hsc_gene_10409.t1;Hsc_gene_10409.t2
|
— |
Q58D06.1 WD repeat-containing protein 74 [Bos taurus]
|
KAI1714967.1 WD repeat-containing protein 74 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005730|GO:0042273
|
GO:0005575_0.899|GO:0110165_0.889|GO:0008150_0.858|GO:0005622_0.830|GO:0016020_0.797|GO:0043226_0.769|GO:0043229_0.758|GO:0043227_0.736|GO:0043231_0.717|GO:0005634_0.625|GO:0008152_0.617|GO:0043170_0.590|GO:0044238_0.590|GO:0009987_0.557|GO:0006139_0.550|GO:0090304_0.538|GO:0016070_0.525
|
IPR001680+256-292_341-380+|IPR015943+65-414+|IPR036322+119-405+|IPR037379+73-417+
|
SM00320+256-292_341-380+
|
— | — |
PTHR16038+73-417+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
418-423
|
1.000
|
1-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
47428.030
|
7.859
|
7.000
|
26.714
|
9.220
|
50.591
|
49.409
|
14.657
|
12.057
|
50.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1406.721
|
1057.647
|
848.915
|
1228.740
|
1190.278
|
927.823
|
1425.565
|
755.280
|
2304.442
|
1638.230
|
1923.749
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.547
|
— |
0.642
|
— |
-0.345
|
0.630
|
-0.402
|
1.059
|
— | — | — | — | — |
No JSON data available for plots.