Hg_chrom4_TN10mRNA_7975
Organism: Heterodera glycines Gene Locus: chr4:5853949-5855303 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.819 | 1.483 | 1.098 | 0.579 | 0.951 | 1.721 | 0.879 | 1.342 | 1.79 | 0.862 | 0.864 | 1.382 | 1.491 | 0.452 | 0.685 | 0.719 | 1.1 | 1.119 | 0.516 | 0.888 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7504
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.943
|
0.071
|
0.004
|
0.391
|
0.030
|
0.035
|
0.039
|
0.006
|
0.040
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008660
|
1.000
|
1.000
|
Hsc_gene_11493.t1
|
Hsc_gene_11493.t1
|
— | — |
KAI6184179.1 RPA-C domain-containing protein [Aphelenchoides bicaudatus]
|
KAI3318334
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.887|GO:0110165_0.870|GO:0005622_0.808|GO:0043226_0.754|GO:0008150_0.746|GO:0043229_0.737|GO:0009987_0.680|GO:0003674_0.632|GO:0016020_0.607|GO:0043228_0.599|GO:0043232_0.599|GO:0065007_0.598|GO:0050789_0.594|GO:0050896_0.580|GO:0050794_0.576|GO:0005488_0.550|GO:0051716_0.550|GO:0005694_0.549|GO:0048519_0.523|GO:0043227_0.518|GO:0023052_0.517|GO:0007154_0.515|GO:0048523_0.512|GO:0043231_0.511|GO:0007165_0.508
|
IPR012340+35-167_36-161+|IPR014892+195-292+|IPR036388+233-297+|IPR036390+235-296+|IPR040260+27-294+
|
— |
PF08784+195-292+Replication_protein_A_C_terminal
|
— |
PTHR13989+27-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
33285.660
|
5.592
|
-4.000
|
23.490
|
11.745
|
48.322
|
51.678
|
11.745
|
11.745
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
midnightblue
|
1070.119
|
932.181
|
917.141
|
1232.763
|
1334.265
|
919.007
|
970.677
|
814.453
|
423.291
|
1694.118
|
1149.478
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.253
|
0.266
|
0.536
|
— |
-0.523
|
— |
-0.279
|
0.394
|
— | — | — | — | — |
No JSON data available for plots.