Hg_chrom4_TN10mRNA_7976
Organism: Heterodera glycines Gene Locus: chr4:5855461-5857003 Feature type: polypeptideProtein Sequence
Length: 166
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.121 | 1.121 | 1.424 | 1.454 | 1.104 | 1.39 | 0.645 | 1.506 | 0.937 | 1.628 | 0.821 | 1.063 | 0.669 | 0.116 | 1.229 | 1.377 | 0.593 | 0.456 | 0.0 | 1.24 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7505
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.776
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.492
|
0.408
|
0.022
|
0.607
|
0.145
|
0.242
|
0.329
|
0.210
|
0.183
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008661
|
1.000
|
1.000
|
Hsc_gene_11492.t1
|
Hsc_gene_11492.t1
|
— | — |
KAI1724039.1 tetratricopeptide repeat domain-containing protein [Ditylenchus destructor]
|
HZI52803
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0003674_0.819|GO:0005488_0.799|GO:0005515_0.762|GO:0005575_0.738|GO:0110165_0.738|GO:0008150_0.704|GO:0009987_0.643|GO:0065007_0.630|GO:0050789_0.625|GO:0050794_0.607|GO:0071944_0.506
|
IPR011990+3-166_28-139+|IPR052386+5-152+
|
— | — | — |
PTHR45954+5-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-166
|
5a6c_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
18546.770
|
5.608
|
-2.500
|
28.916
|
9.639
|
52.410
|
47.590
|
14.458
|
14.458
|
48.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
633.045
|
955.388
|
869.369
|
759.685
|
718.577
|
691.843
|
653.256
|
714.989
|
638.900
|
279.232
|
433.376
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.366
|
-0.468
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.