Hg_chrom4_TN10mRNA_7978
Organism: Heterodera glycines Gene Locus: chr4:5858952-5861127 Feature type: polypeptideProtein Sequence
Length: 556
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.648 | 0.837 | 0.719 | 0.992 | 1.379 | 1.107 | 0.856 | 1.439 | 0.999 | 1.312 | 0.954 | 1.481 | 0.949 | 1.072 | 1.505 | 1.079 | 0.649 | 0.818 | 1.245 | 1.005 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7507
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.795
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.584
|
0.178
|
0.021
|
0.609
|
0.122
|
0.037
|
0.054
|
0.004
|
0.046
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008663
|
1.000
|
1.000
|
Hsc_gene_11490.t1
|
Hsc_gene_11490.t1
|
— |
Q3KRC5.1 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Rattus norvegicus]
|
KAI1701095.1 dihydrouridine synthase (Dus) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008033|GO:0017150|GO:0050660
|
GO:0005575_0.696|GO:0110165_0.692|GO:0008150_0.680|GO:0005622_0.648|GO:0009987_0.626|GO:0003674_0.623|GO:0016020_0.590|GO:0043226_0.563|GO:0043229_0.547|GO:0008152_0.546|GO:0044238_0.533|GO:0044237_0.525|GO:0009058_0.523|GO:0043227_0.519|GO:0043170_0.514|GO:0043231_0.513
|
IPR013785+205-448+|IPR018517+293-311+|IPR035587+209-444_212-452+
|
— |
PF01207+212-452+Dihydrouridine_synthase_(Dus)
|
— |
PTHR45846+6-556+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-76
|
1.000
|
77-556
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
63281.370
|
8.374
|
16.000
|
28.777
|
11.331
|
48.201
|
51.799
|
16.547
|
12.230
|
45.683
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2929.481
|
3547.115
|
3957.598
|
2292.926
|
2034.661
|
1942.286
|
3010.576
|
3083.403
|
5039.439
|
1586.189
|
3066.153
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.766
|
-0.679
|
-0.204
|
— |
0.644
|
0.559
|
— |
1.558
|
— | — | — | — |
No JSON data available for plots.