Hg_chrom4_TN10mRNA_7981
Organism: Heterodera glycines Gene Locus: chr4:5867469-5869204 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 2.01 | 1.347 | 0.213 | 1.749 | 0.317 | 0.661 | 0.617 | 1.097 | 1.335 | 1.309 | 1.089 | 1.029 | 0.237 | 1.26 | 1.146 | 0.708 | 0.655 | 0.475 | 0.908 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7510
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.601
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.822
|
0.082
|
0.003
|
0.449
|
0.033
|
0.019
|
0.102
|
0.026
|
0.030
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003855
|
2.000
|
1.000
|
Hsc_gene_11488.t1
|
Hsc_gene_11488.t1
|
— |
Q9U213.1 SRRM2 protein homolog rsr-2 [Caenorhabditis elegans]
|
KAF7630756.1 cwf21 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.912|GO:0110165_0.910|GO:0005622_0.894|GO:0043226_0.840|GO:0043229_0.826|GO:0016020_0.824|GO:0043227_0.785|GO:0043231_0.765|GO:0005634_0.684|GO:0043228_0.570|GO:0043232_0.570
|
IPR013170+57-97_57-102+|IPR051372+1-153+
|
SM01115+57-102+
|
PF08312+57-97+cwf21_domain
|
— |
PTHR36562+1-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-162
|
9esi_b
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
18341.450
|
4.961
|
-4.000
|
33.951
|
8.642
|
56.173
|
43.827
|
16.049
|
17.901
|
48.148
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
greenyellow
|
312.181
|
126.859
|
141.515
|
168.266
|
183.634
|
188.589
|
138.413
|
265.639
|
280.397
|
700.653
|
520.543
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.271
|
0.360
|
— | — |
-0.435
|
0.391
|
-0.798
|
— | — | — | — | — |
No JSON data available for plots.