Hg_chrom4_TN10mRNA_7982
Organism: Heterodera glycines Gene Locus: chr4:5870751-5871609 Feature type: polypeptideProtein Sequence
Length: 106
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 2.413 | 0.515 | 0.325 | 2.044 | 0.484 | 0.786 | 0.943 | 1.048 | 1.53 | 1.144 | 1.11 | 0.524 | 0.726 | 0.77 | 0.809 | 0.928 | 0.572 | 0.726 | 1.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7511
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.699
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.784
|
0.055
|
0.003
|
0.527
|
0.038
|
0.014
|
0.091
|
0.005
|
0.022
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003855
|
2.000
|
1.000
|
Hsc_gene_11488.t1
|
Hsc_gene_11488.t1
|
— |
Q9U213.1 SRRM2 protein homolog rsr-2 [Caenorhabditis elegans]
|
KAF7630756.1 cwf21 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.927|GO:0110165_0.916|GO:0005622_0.869|GO:0043226_0.818|GO:0016020_0.809|GO:0043229_0.798|GO:0043227_0.752|GO:0043231_0.740|GO:0005634_0.636
|
IPR013170+57-79+|IPR051372+1-77+
|
— |
PF08312+57-79+cwf21_domain
|
— |
PTHR36562+1-77+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;102-106
|
1.000
|
4-101
|
9fmd_SR
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
11945.380
|
4.911
|
-3.000
|
28.302
|
9.434
|
51.887
|
48.113
|
13.208
|
15.094
|
47.170
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
42.040
|
49.514
|
27.901
|
27.492
|
27.757
|
28.224
|
49.599
|
100.873
|
10.279
|
59.457
|
38.381
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.061
|
-0.986
|
— | — | — |
0.826
|
1.734
|
-0.881
|
— | — | — | — | — |
No JSON data available for plots.