Hg_chrom4_TN10mRNA_7984
Organism: Heterodera glycines Gene Locus: chr4:5872489-5873441 Feature type: polypeptideProtein Sequence
Length: 237
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.227 | 0.491 | 0.997 | 0.727 | 0.914 | 1.623 | 0.452 | 1.899 | 1.313 | 0.684 | 0.511 | 2.978 | 1.172 | 1.785 | 1.292 | 0.844 | 0.83 | 1.151 | 0.649 | 0.496 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7513
|
— | — |
1.667
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
1-24
|
0.990
|
33-68
|
0.993
|
— | — |
0.000
|
— | — |
0.547
|
0.080
|
0.052
|
0.450
|
0.083
|
0.095
|
0.154
|
0.028
|
0.054
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002093
|
3.000
|
1.000
|
Hsc_gene_11482.t2
|
Hsc_gene_11482.t1;Hsc_gene_11482.t2;Hsc_gene_11482.t3
|
— |
Q5RC80.1 RNA-binding protein 39 [Pongo abelii]
|
KAI1708433.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0005634|GO:0006397
|
GO:0005575_0.746|GO:0003674_0.745|GO:0110165_0.743|GO:0005488_0.675|GO:0005622_0.653|GO:0016020_0.641|GO:0043226_0.586|GO:0008150_0.576|GO:0043229_0.565|GO:0043227_0.551|GO:0043231_0.529|GO:0009987_0.515
|
IPR006509+125-235+|IPR012677+146-237+|IPR029123+126-169+|IPR035979+147-234+
|
— |
PF15519+126-169+linker_between_RRM2_and_RRM3_domains_in_RBM39_protein
|
— |
PTHR48036+125-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;47-99
|
2.000
|
8-46;100-237
|
2lq5_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
26460.420
|
6.759
|
1.500
|
24.473
|
10.549
|
43.882
|
56.118
|
13.502
|
10.970
|
51.899
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
592.968
|
652.133
|
319.996
|
235.930
|
273.740
|
198.472
|
376.329
|
453.544
|
198.299
|
1504.206
|
944.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.257
|
-1.604
|
-0.331
|
0.183
|
-0.450
|
0.933
|
1.089
|
— |
-3.035
|
— |
-2.336
|
— | — |
No JSON data available for plots.