Hg_chrom4_TN10mRNA_7986
Organism: Heterodera glycines Gene Locus: chr4:5875978-5876375 Feature type: polypeptideProtein Sequence
Length: 80
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.436 | 1.744 | 0.0 | 0.0 | 0.833 | 0.962 | 0.446 | 0.625 | 2.5 | 2.365 | 0.568 | 2.206 | 1.736 | 0.24 | 1.276 | 0.893 | 0.41 | 2.083 | 0.0 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7515
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.910
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.194
|
0.364
|
0.090
|
0.059
|
0.820
|
0.256
|
0.323
|
0.173
|
0.247
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008665
|
1.000
|
1.000
|
Hsc_gene_12388.t1
|
Hsc_gene_12388.t1
|
— |
Q3E834.1 Protein transport protein YOS1 [Saccharomyces cerevisiae S288C]
|
KAI6182092.1 Macrophage erythroblast attacher [Aphelenchoides bicaudatus]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.941|GO:0110165_0.932|GO:0016020_0.864|GO:0005622_0.779|GO:0005737_0.779|GO:0005886_0.771|GO:0071944_0.771|GO:0043226_0.750|GO:0043229_0.745|GO:0008150_0.725|GO:0043227_0.725|GO:0043231_0.725|GO:0009987_0.665|GO:0005773_0.656|GO:0012505_0.625|GO:0051179_0.613|GO:0006810_0.600|GO:0051234_0.600|GO:0005783_0.589|GO:0051641_0.508|GO:0031090_0.505
|
IPR013880+1-80_4-80+
|
— |
PF08571+4-80+Yos1-like
|
— |
PTHR15858+1-80+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-80
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
9174.140
|
10.698
|
4.500
|
16.250
|
10.000
|
36.250
|
63.750
|
11.250
|
5.000
|
38.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
320.895
|
242.258
|
311.803
|
541.742
|
671.406
|
518.774
|
275.536
|
295.002
|
78.194
|
274.076
|
190.127
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.024
|
0.906
|
0.278
|
-0.357
|
-0.904
|
-0.913
|
— | — | — | — |
7.942
|
8.401
|
No JSON data available for plots.