Hg_chrom4_TN10mRNA_7990
Organism: Heterodera glycines Gene Locus: chr4:5883529-5886776 Feature type: polypeptideProtein Sequence
Length: 493
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.439 | 1.038 | 0.738 | 1.399 | 1.318 | 1.404 | 0.869 | 1.116 | 0.947 | 1.288 | 0.43 | 0.955 | 0.958 | 0.663 | 1.325 | 1.014 | 0.632 | 0.953 | 1.56 | 0.358 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7519
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.748
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.582
|
0.370
|
0.083
|
0.792
|
0.158
|
0.144
|
0.082
|
0.080
|
0.049
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003857
|
2.000
|
1.000
|
Hsc_gene_12386.t1
|
Hsc_gene_12386.t1
|
— |
Q5XIG6.1 N-acetylgalactosamine kinase [Rattus norvegicus]
|
KAI1724804.1 galactokinase galactose-binding signature domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004335|GO:0005524|GO:0005737|GO:0006012|GO:0016301|GO:0016773|GO:0046835
|
GO:0008150_0.949|GO:0009987_0.844|GO:0008152_0.786|GO:0044238_0.763|GO:0044237_0.723|GO:0003674_0.708|GO:0005575_0.666|GO:0110165_0.666|GO:0005975_0.621|GO:0006793_0.585|GO:0006796_0.585|GO:0003824_0.578|GO:0044281_0.573|GO:0005622_0.569|GO:0005737_0.529|GO:0016740_0.525|GO:0016310_0.510|GO:0046835_0.504
|
IPR000705+18-468_40-58_143-161_377-391+|IPR006203+152-163+|IPR006204+147-221+|IPR006206+9-475+|IPR013750+404-470+|IPR014721+23-243+|IPR019539+22-71+|IPR019741+40-51+|IPR020568+18-247+|IPR036554+249-485+
|
— |
PF00288+147-221+GHMP_kinases_N_terminal_domain|PF08544+404-470+GHMP_kinases_C_terminal|PF10509+22-71+Galactokinase_galactose-binding_signature
|
— |
PTHR10457+21-468+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-493
|
2hfu_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
53858.940
|
5.354
|
-7.500
|
23.529
|
8.925
|
44.422
|
55.578
|
11.562
|
11.968
|
52.941
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1533.557
|
222.817
|
1209.047
|
1876.464
|
3363.133
|
4502.078
|
2644.826
|
1980.632
|
100.813
|
709.078
|
448.393
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.211
|
2.937
|
0.742
|
0.810
|
0.435
|
-0.757
|
-1.293
|
0.561
|
— | — | — | — |
6.078
|
No JSON data available for plots.