Hg_chrom4_TN10mRNA_7993
Organism: Heterodera glycines Gene Locus: chr4:5894718-5897444 Feature type: polypeptideProtein Sequence
Length: 590
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.572 | 1.222 | 1.079 | 0.818 | 1.582 | 1.043 | 0.444 | 1.186 | 1.469 | 1.397 | 0.899 | 1.396 | 2.024 | 0.424 | 1.245 | 1.09 | 0.528 | 0.976 | 1.043 | 0.698 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7521
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.880
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.360
|
0.105
|
0.009
|
0.538
|
0.155
|
0.396
|
0.467
|
0.005
|
0.125
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008666
|
1.000
|
1.000
|
Hsc_gene_11487.t1
|
Hsc_gene_11487.t1
|
— |
O44502.1 Conserved oligomeric Golgi complex subunit 8 [Caenorhabditis elegans]
|
KAI1702427.1 dor1-like family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0017119
|
GO:0008150_0.831|GO:0009987_0.788|GO:0005575_0.651|GO:0110165_0.651|GO:0016020_0.597|GO:0005622_0.574|GO:0071944_0.541|GO:0043226_0.539|GO:0005886_0.535|GO:0005737_0.530|GO:0032501_0.530|GO:0043229_0.514|GO:0032502_0.513|GO:0048856_0.513|GO:0065007_0.511
|
IPR007255+13-544_15-355+|IPR016159+105-339+
|
— |
PF04124+15-355+Dor1-like_family
|
— |
PTHR21311+13-544+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
531-590
|
1.000
|
1-530
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
68802.600
|
5.141
|
-13.000
|
29.831
|
13.390
|
50.000
|
50.000
|
14.407
|
15.424
|
41.695
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
tan
|
1649.903
|
1795.686
|
2150.316
|
2383.080
|
2424.253
|
2127.268
|
1532.496
|
1986.579
|
1312.599
|
833.996
|
1039.111
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.271
|
0.257
|
— |
-0.174
|
-0.465
|
-0.203
|
— | — | — | — | — | — |
No JSON data available for plots.