SCN Proteipedia

Hg_chrom4_TN10mRNA_7994

Organism: Heterodera glycines Gene Locus: chr4:5897652-5898438 Feature type: polypeptide

Protein Sequence

Length: 147

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.475	0.475	0.618	2.346	1.814	0.698	0.648	1.361	1.361	1.195	1.237	0.8	1.134	0.916	2.221	0.486	1.004	0.515	1.57	0.8	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7522	—	—	1.111	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.843

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.503	0.354	0.004	0.218	0.107	0.135	0.114	0.017	0.151	0.109

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008667	1.000	1.000	Hsc_gene_11486.t1	Hsc_gene_11486.t1	—	P34313.1 Protein BUD31 homolog [Caenorhabditis elegans]	KAI1711321.1 g10 protein domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005634	GO:0008150_0.932\|GO:0005575_0.895\|GO:0110165_0.892\|GO:0009987_0.870\|GO:0005622_0.833\|GO:0008152_0.784\|GO:0043170_0.784\|GO:0044238_0.763\|GO:0009058_0.761\|GO:0009059_0.761\|GO:0010467_0.761\|GO:0044237_0.761\|GO:0044249_0.761\|GO:0016020_0.758\|GO:0043226_0.758\|GO:0006139_0.737\|GO:0043229_0.733\|GO:0090304_0.729\|GO:0034654_0.725\|GO:0141187_0.722\|GO:0016070_0.720\|GO:0032774_0.716\|GO:0043227_0.712\|GO:0043231_0.696\|GO:0006396_0.678\|GO:0016071_0.676\|GO:0006397_0.675\|GO:0000375_0.674\|GO:0000377_0.674\|GO:0000398_0.674\|GO:0008380_0.674\|GO:0065007_0.653\|GO:0032991_0.649\|GO:0050789_0.647\|GO:0005634_0.642\|GO:0050794_0.627\|GO:0003674_0.608\|GO:0050896_0.597\|GO:0005488_0.594\|GO:0023052_0.563\|GO:0051716_0.556\|GO:0007154_0.554\|GO:0140513_0.554\|GO:1990904_0.553\|GO:0030532_0.546\|GO:0120114_0.546\|GO:0097525_0.545\|GO:0005515_0.543\|GO:0005686_0.540\|GO:0048518_0.538\|GO:0007165_0.534\|GO:0048522_0.528\|GO:0019222_0.512\|GO:0031323_0.512\|GO:0060255_0.503	IPR001748+6-146_15-35_50-73_74-99_100-125_137-146+\|IPR018230+103-125_137-146+	—	PF01125+6-146+Pre-mRNA-splicing_factor_BUD31	—	PTHR19411+6-146+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2	1.000	3-147	8ro1_N	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.543	17381.180	8.652	9.000	36.054	11.565	50.340	49.660	21.769	14.286	39.456

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	lightcyan	1060.331	666.645	769.164	1111.882	1251.279	1078.370	971.256	1042.457	766.056	1480.261	1174.173

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.601	0.641	0.139	-0.200	—	—	—	—	—	—	—	—

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