Hg_chrom4_TN10mRNA_7995
Organism: Heterodera glycines Gene Locus: chr4:5900362-5901606 Feature type: polypeptideProtein Sequence
Length: 242
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 0.673 | 0.751 | 1.852 | 1.515 | 1.377 | 0.344 | 1.446 | 0.643 | 1.954 | 0.939 | 0.729 | 1.607 | 0.795 | 1.349 | 0.945 | 0.474 | 1.064 | 0.954 | 0.243 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7523
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_11485
|
— |
19-Eggs_Female
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-19
|
0.998
|
1.000
|
0.000
|
0.000
|
0.212
|
0.285
|
0.021
|
0.164
|
0.138
|
0.253
|
0.270
|
0.218
|
0.164
|
0.805
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008668
|
1.000
|
1.000
|
Hsc_gene_11485.t1
|
Hsc_gene_11485.t1;Hsc_gene_11485.t2
|
— | — |
KAI6181221.1 Saposin-like type B, 1 domain and Saposin B domain and Saposin-like domain-containing protein [Aphelenchoides besseyi]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008139+32-111_34-107_132-214_134-210+|IPR011001+72-164_133-210+|IPR051428+35-216+
|
SM00741+34-107_134-210+
|
— | — |
PTHR11480+35-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
225-242
|
1.000
|
1-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
27724.200
|
7.017
|
2.500
|
28.926
|
10.744
|
46.694
|
53.306
|
15.702
|
13.223
|
43.388
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
4033.640
|
12930.192
|
2460.953
|
3644.525
|
4701.735
|
5172.976
|
6231.843
|
4197.525
|
74.444
|
2838.936
|
1654.154
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.622
|
-1.964
|
0.674
|
0.336
|
— |
0.279
|
-0.405
|
0.712
|
-5.399
|
5.800
|
— | — | — |