SCN Proteipedia

Hg_chrom4_TN10mRNA_7998

Organism: Heterodera glycines Gene Locus: chr4:5908407-5911268 Feature type: polypeptide

Protein Sequence

Length: 530

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.921	1.009	1.098	0.455	1.384	0.677	0.629	0.943	0.881	0.867	1.001	1.443	0.839	0.98	2.695	1.24	0.835	0.915	0.435	0.333	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7526	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKAKEVGIKMSDSEGKRKRSRSGSRERKRRRSRSREKKKRDSSRERRRRSPSENSKRKRRSSSRDRRRSRSRSRDRRRSPISRRRSRSRSPLEKRRSPAPRRLPGPER	103-125	0.978	—	—	—	—	0.000	—	—	0.847	0.040	0.013	0.098	0.128	0.057	0.101	0.002	0.092	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002093	3.000	1.000	Hsc_gene_11482.t2	Hsc_gene_11482.t1;Hsc_gene_11482.t2;Hsc_gene_11482.t3;Hsc_gene_11482.t4	—	Q5RC80.1 RNA-binding protein 39 [Pongo abelii]	KAI1708433.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0005634\|GO:0006397	GO:0005575_0.823\|GO:0110165_0.820\|GO:0016020_0.765\|GO:0008150_0.743\|GO:0003674_0.725\|GO:0005488_0.712\|GO:0005622_0.706\|GO:0043226_0.698\|GO:0043229_0.697\|GO:0009987_0.673\|GO:0043227_0.639\|GO:0005634_0.616\|GO:0043231_0.616\|GO:0065007_0.594\|GO:0008152_0.565\|GO:0009058_0.565\|GO:0009059_0.565\|GO:0010467_0.565\|GO:0043170_0.565\|GO:0044237_0.565\|GO:0044249_0.565\|GO:0097159_0.561\|GO:0050789_0.559\|GO:0003676_0.556\|GO:0006139_0.554\|GO:0044238_0.554\|GO:0050794_0.547\|GO:0090304_0.538\|GO:0016070_0.527	IPR000504+173-250_174-246_175-243_276-350_277-346_278-344_424-503+\|IPR006509+33-517_50-408+\|IPR012677+165-260_276-378_418-528+\|IPR029123+374-441+\|IPR035979+89-246_277-504+	SM00360+174-246_277-346_424-503+	PF00076+175-243_278-344+RNA_recognition_motif\|PF15519+374-441+linker_between_RRM2_and_RRM3_domains_in_RBM39_protein	—	PTHR48036+33-517+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-183;334-389;530-530	2.000	184-333;390-529	2lq5_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.763	60247.130	10.686	34.000	36.038	6.604	56.792	43.208	21.698	14.340	49.811

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	3982.177	5553.690	5417.476	5067.029	4489.308	3498.856	2816.776	4934.305	3406.364	2950.709	3145.990

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.266	-0.270	—	-0.207	-0.345	-0.303	0.389	-0.666	—	—	—	—	—

No JSON data available for plots.

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