Hg_chrom4_TN10mRNA_8000
Organism: Heterodera glycines Gene Locus: chr4:5910759-5911268 Feature type: polypeptideProtein Sequence
Length: 95
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.49 | 0.734 | 1.531 | 0.0 | 2.105 | 0.0 | 0.501 | 0.0 | 0.468 | 0.284 | 2.552 | 1.858 | 0.292 | 0.202 | 4.296 | 2.105 | 0.173 | 0.638 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7526
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKAKEVGIKMSDSEGKRKRSRSGSRERKRRRSRSREKKKRDSSRERRRRSPSENSKRKRRSRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.939
|
0.049
|
0.007
|
0.096
|
0.070
|
0.049
|
0.123
|
0.002
|
0.062
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008669
|
1.000
|
1.000
|
Hsc_gene_11482.t4
|
Hsc_gene_11482.t1;Hsc_gene_11482.t4
|
— | — |
CAD2123911.1 unnamed protein product [Meloidogyne enterolobii];CAD2127137.1 unnamed protein product [Meloidogyne enterolobii];CAD2207279.1 unnamed protein product [Meloidogyne enterolobii]
|
MDE7157705
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-95
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.914
|
11324.720
|
11.482
|
16.000
|
58.947
|
1.053
|
77.895
|
22.105
|
37.895
|
21.053
|
41.053
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
3982.177
|
5553.690
|
5417.476
|
5067.029
|
4489.308
|
3498.856
|
2816.776
|
4934.305
|
3406.364
|
2950.709
|
3145.990
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.266
|
-0.270
|
— |
-0.207
|
-0.345
|
-0.303
|
0.389
|
-0.666
|
— | — | — | — | — |
No JSON data available for plots.