Hg_chrom4_TN10mRNA_8002
Organism: Heterodera glycines Gene Locus: chr4:5916127-5918887 Feature type: polypeptideProtein Sequence
Length: 663
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.842 | 1.333 | 1.015 | 0.676 | 1.006 | 1.354 | 0.611 | 1.433 | 1.307 | 1.284 | 0.868 | 1.242 | 0.964 | 0.957 | 1.17 | 1.185 | 0.989 | 0.686 | 0.232 | 1.065 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7528
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RRATTTSVNPRLRPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.417
|
0.142
|
0.009
|
0.691
|
0.131
|
0.279
|
0.204
|
0.193
|
0.274
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008671
|
1.000
|
1.000
|
Hsc_gene_11480.t1
|
Hsc_gene_11480.t1
|
— |
G5ECQ3.1 Serine/threonine-protein kinase sel-5 [Caenorhabditis elegans]
|
KAF7637887.1 Protein kinase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.866|GO:0110165_0.862|GO:0008150_0.844|GO:0005622_0.786|GO:0065007_0.726|GO:0050789_0.714|GO:0016020_0.700|GO:0009987_0.686|GO:0050794_0.599|GO:0043226_0.585|GO:0005737_0.582|GO:0043229_0.541|GO:0003674_0.536
|
IPR000719+61-328_61-334+|IPR008271+188-200+|IPR011009+53-344+
|
SM00220+61-334+
|
PF00069+61-328+Protein_kinase_domain
|
— |
PTHR22967+42-553+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-52;382-576
|
2.000
|
53-381;577-663
|
5l4q_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
74430.210
|
7.358
|
8.500
|
25.943
|
10.256
|
51.282
|
48.718
|
14.329
|
11.614
|
49.472
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
2775.697
|
1356.312
|
1177.603
|
1128.944
|
1029.182
|
1046.599
|
1306.681
|
1749.160
|
1197.862
|
7947.348
|
5054.711
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.434
|
-0.402
|
— |
-0.165
|
— |
0.331
|
0.635
|
-0.278
|
-2.824
|
— |
-2.574
|
— | — |
No JSON data available for plots.