Hg_chrom4_TN10mRNA_8006
Organism: Heterodera glycines Gene Locus: chr4:5925718-5926242 Feature type: polypeptideProtein Sequence
Length: 145
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 0.321 | 0.376 | 0.238 | 0.92 | 0.707 | 0.575 | 0.345 | 0.613 | 1.398 | 0.731 | 2.434 | 2.49 | 1.857 | 3.237 | 1.478 | 0.339 | 0.522 | 1.061 | 0.609 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7531
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_11477
|
— |
7-Not_Clustered
|
0.935
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRPAERAAPLIRFGKR
|
— | — | — | — |
1-37
|
0.931
|
0.992
|
0.000
|
0.000
|
0.148
|
0.326
|
0.066
|
0.107
|
0.163
|
0.006
|
0.017
|
0.019
|
0.025
|
0.948
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008673
|
1.000
|
1.000
|
Hsc_gene_11477.t1
|
Hsc_gene_11477.t1
|
— | — | — |
MDF2436300
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007218
|
— |
IPR002544+116-123+
|
— |
PF01581+116-123+FMRFamide_related_peptide_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
142-145
|
1.000
|
1-141
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
17083.040
|
12.168
|
19.500
|
28.966
|
13.103
|
45.517
|
54.483
|
21.379
|
7.586
|
40.690
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1186.596
|
210.791
|
1279.984
|
743.410
|
215.136
|
57.987
|
56.633
|
508.802
|
1652.321
|
2799.838
|
2308.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.373
|
1.681
|
-0.675
|
-1.822
|
-1.876
|
— |
3.034
|
-3.024
|
— | — |
-3.589
|
— | — |