SCN Proteipedia

Hg_chrom4_TN10mRNA_8008

Organism: Heterodera glycines Gene Locus: chr4:5928985-5930880 Feature type: polypeptide

Protein Sequence

Length: 436

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.227	0.747	1.001	0.316	1.147	0.412	0.983	1.72	1.172	1.488	0.556	0.944	0.892	1.103	1.451	1.048	0.677	1.39	0.176	0.337	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7533	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	0.978

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RRIAGMDSHWENARLRVK	—	—	—	—	—	—	0.000	—	—	0.464	0.403	0.006	0.603	0.137	0.091	0.149	0.093	0.044	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008675	1.000	1.000	Hsc_gene_11475.t1	Hsc_gene_11475.t1	—	Q9NQX3.1 Gephyrin [Homo sapiens]	KAI1714437.1 putative molybdopterin binding domain-containing protein [Ditylenchus destructor]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006777\|GO:0032324	GO:0008150_0.873\|GO:0003674_0.818\|GO:0009987_0.798\|GO:0005575_0.785\|GO:0110165_0.764\|GO:0008152_0.745\|GO:0003824_0.734\|GO:0044237_0.712\|GO:0044238_0.711\|GO:0009058_0.699\|GO:0043170_0.673\|GO:0019538_0.657\|GO:0006793_0.643\|GO:0006796_0.643\|GO:0016740_0.641\|GO:0019637_0.634\|GO:0016020_0.625\|GO:0090407_0.625\|GO:0016772_0.614\|GO:0016779_0.614\|GO:0016782_0.614\|GO:0016783_0.614\|GO:0030366_0.614\|GO:0031071_0.614\|GO:0032324_0.614\|GO:0043545_0.614\|GO:0051189_0.614\|GO:0061598_0.614\|GO:0061604_0.614\|GO:0061605_0.614\|GO:0070566_0.614\|GO:0005488_0.611\|GO:0005515_0.570\|GO:0005622_0.567\|GO:0071944_0.565\|GO:0005886_0.540\|GO:0005737_0.539	IPR001453+183-337_187-341_188-340+\|IPR005110+9-173+\|IPR005111+356-431+\|IPR008284+266-301+\|IPR036135+8-182+\|IPR036425+182-345_183-344+\|IPR036688+353-434_354-436+\|IPR038987+8-433_8-434+	SM00852+187-341+	PF00994+188-340+Probable_molybdopterin_binding_domain\|PF03453+9-173+MoeA_N-terminal_region_(domain_I_and_II)\|PF03454+356-431+MoeA_C-terminal_region_(domain_IV)	G3DSA:2.170.190.11:FF:000001+48-147+Molybdopterin_molybdenumtransferase\|G3DSA:3.40.980.10:FF:000001+183-344+Molybdopterin_molybdenumtransferase	PTHR10192+8-434+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-436	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.671	46848.580	6.559	0.500	26.606	8.028	42.890	57.110	14.220	12.385	54.817

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	grey	558.728	412.764	655.664	602.563	735.309	422.935	1157.557	1035.897	140.452	455.586	320.529

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.438	0.408	—	0.255	-0.783	1.463	1.192	0.301	—	—	—	—	—

No JSON data available for plots.

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