SCN Proteipedia

Hg_chrom4_TN10mRNA_8009

Organism: Heterodera glycines Gene Locus: chr4:5931202-5936827 Feature type: polypeptide

Protein Sequence

Length: 1,143

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.855	0.977	0.716	0.664	0.875	1.077	0.844	1.05	1.264	1.596	0.809	1.698	1.41	0.841	0.786	1.012	1.076	1.06	1.009	0.875	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7534	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.743

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole	—	RRQRILKALDRRKVHK	—	—	62-86	0.999	—	—	0.000	—	—	0.093	0.118	0.027	0.283	0.208	0.613	0.317	0.007	0.614	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000851	3.000	3.000	Hsc_gene_11474.t1;Hsc_gene_11474.t3;Hsc_gene_3083.t1	Hsc_gene_11474.t1;Hsc_gene_11474.t2;Hsc_gene_11474.t3	—	Q09573.2 Potassium/chloride cotransporter 3 [Caenorhabditis elegans]	KAI1708469.1 amino acid permease domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006811\|GO:0015377\|GO:0016020\|GO:0022857\|GO:0055085	GO:0008150_0.972\|GO:0009987_0.909\|GO:0051179_0.837\|GO:0005575_0.835\|GO:0006810_0.833\|GO:0051234_0.833\|GO:0110165_0.803\|GO:0003674_0.783\|GO:0016020_0.771\|GO:0071944_0.748\|GO:0055085_0.733\|GO:0005886_0.732\|GO:0006811_0.732\|GO:0034220_0.688\|GO:0005215_0.679\|GO:0022857_0.679\|GO:0098660_0.654\|GO:0015075_0.652\|GO:0006812_0.642\|GO:0098655_0.636\|GO:0008324_0.622\|GO:0030001_0.615\|GO:0015318_0.614\|GO:0098662_0.599\|GO:0022890_0.567\|GO:0046873_0.567\|GO:0006820_0.556\|GO:0015698_0.553\|GO:0006821_0.550\|GO:0098656_0.549\|GO:0098661_0.549\|GO:1902476_0.544\|GO:0022804_0.522\|GO:0008509_0.521\|GO:0015103_0.519\|GO:0015108_0.515\|GO:0015291_0.514\|GO:0022853_0.514\|GO:0015293_0.510\|GO:0015294_0.509	IPR004841+162-293_441-727+\|IPR004842+145-1141+\|IPR018491+850-948_1065-1142+	—	PF00324+162-293_441-727+Amino_acid_permease\|PF03522+850-948_1065-1142+Solute_carrier_family_12	—	PTHR11827+145-1141+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-68;961-1077	2.000	69-960;1078-1143	6vwa_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.713	126675.640	7.459	12.000	20.472	11.461	42.520	57.480	11.286	9.186	49.519

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	tan	2203.411	1793.979	3051.529	2469.033	2118.916	2506.980	3905.303	2756.652	2639.819	684.162	1522.300

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.539	0.324	-0.198	-0.253	0.257	0.650	—	0.647	1.821	—	—	—	—

No JSON data available for plots.

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