Hg_chrom4_TN10mRNA_8010
Organism: Heterodera glycines Gene Locus: chr4:5931202-5938155 Feature type: polypeptideProtein Sequence
Length: 1,130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 0.988 | 0.756 | 0.702 | 0.959 | 0.998 | 0.895 | 0.841 | 1.259 | 1.495 | 0.939 | 1.77 | 1.352 | 0.715 | 0.777 | 1.011 | 1.074 | 1.059 | 1.021 | 0.859 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7534
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.743
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRQRILKALDRRKVHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.084
|
0.127
|
0.022
|
0.280
|
0.184
|
0.571
|
0.284
|
0.003
|
0.659
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000851
|
3.000
|
3.000
|
Hsc_gene_11474.t1;Hsc_gene_11474.t3;Hsc_gene_3083.t1
|
Hsc_gene_11474.t1;Hsc_gene_11474.t2;Hsc_gene_11474.t3;Hsc_gene_11474.t4
|
— |
Q09573.2 Potassium/chloride cotransporter 3 [Caenorhabditis elegans]
|
KAI1708469.1 amino acid permease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006811|GO:0015377|GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.971|GO:0009987_0.907|GO:0005575_0.836|GO:0051179_0.834|GO:0006810_0.829|GO:0051234_0.829|GO:0110165_0.803|GO:0003674_0.781|GO:0016020_0.772|GO:0071944_0.744|GO:0055085_0.730|GO:0005886_0.729|GO:0006811_0.729|GO:0034220_0.686|GO:0005215_0.677|GO:0022857_0.677|GO:0098660_0.651|GO:0015075_0.649|GO:0006812_0.640|GO:0098655_0.633|GO:0008324_0.620|GO:0030001_0.612|GO:0015318_0.611|GO:0098662_0.597|GO:0022890_0.566|GO:0046873_0.566|GO:0006820_0.554|GO:0015698_0.551|GO:0006821_0.549|GO:0098656_0.548|GO:0098661_0.548|GO:1902476_0.543|GO:0022804_0.522|GO:0008509_0.520|GO:0015103_0.518|GO:0015108_0.515|GO:0015291_0.514|GO:0022853_0.514|GO:0015293_0.509|GO:0015294_0.508
|
IPR004841+149-280_428-714+|IPR004842+116-1128+|IPR018491+839-934_1058-1129+
|
— |
PF00324+149-280_428-714+Amino_acid_permease|PF03522+839-934_1058-1129+Solute_carrier_family_12
|
— |
PTHR11827+116-1128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-92;948-1064
|
2.000
|
93-947;1065-1130
|
6vwa_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
124970.460
|
7.506
|
10.500
|
21.593
|
10.796
|
43.363
|
56.637
|
11.681
|
9.912
|
49.823
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
tan
|
2203.411
|
1793.979
|
3051.529
|
2469.033
|
2118.916
|
2506.980
|
3905.303
|
2756.652
|
2639.819
|
684.162
|
1522.300
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
0.324
|
-0.198
|
-0.253
|
0.257
|
0.650
|
— |
0.647
|
1.821
|
— | — | — | — |
No JSON data available for plots.