Hg_chrom4_TN10mRNA_8011
Organism: Heterodera glycines Gene Locus: chr4:5939095-5939795 Feature type: polypeptideProtein Sequence
Length: 164
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 0.709 | 0.222 | 0.841 | 0.508 | 1.094 | 0.871 | 0.915 | 0.949 | 1.813 | 0.554 | 3.945 | 1.863 | 0.352 | 0.996 | 1.132 | 1.2 | 0.831 | 2.814 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7535
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.393
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — |
80-100
|
0.964
|
— | — | — | — |
0.000
|
— | — |
0.049
|
0.021
|
0.005
|
0.082
|
0.519
|
0.906
|
0.430
|
0.025
|
0.474
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008676
|
1.000
|
1.000
|
Hsc_gene_11473.t1
|
Hsc_gene_11473.t1
|
— |
Q8WNR0.1 High affinity copper uptake protein 1 [Sus scrofa]
|
KAI1709041.1 ctr copper transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005375|GO:0016020|GO:0035434
|
GO:0005575_0.938|GO:0110165_0.930|GO:0016020_0.892|GO:0071944_0.876|GO:0005886_0.858|GO:0008150_0.790|GO:0005622_0.672|GO:0043226_0.644|GO:0005737_0.639|GO:0043229_0.631|GO:0043227_0.626|GO:0009987_0.614|GO:0043231_0.611|GO:0005773_0.598|GO:0012505_0.573|GO:0051179_0.559|GO:0051234_0.550|GO:0031090_0.549|GO:0006810_0.547|GO:0003674_0.537
|
IPR007274+1-139_4-134+
|
— |
PF04145+4-134+Ctr_copper_transporter_family
|
— |
PTHR12483+1-139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-164
|
6m98_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
18525.940
|
9.880
|
8.500
|
14.634
|
14.634
|
37.195
|
62.805
|
10.366
|
4.268
|
45.122
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1130.138
|
536.693
|
689.183
|
818.935
|
903.404
|
1783.065
|
2867.784
|
785.091
|
191.977
|
1656.312
|
1028.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.472
|
0.358
|
— |
0.996
|
0.696
|
-1.293
|
2.014
|
— | — | — | — | — |
No JSON data available for plots.