SCN Proteipedia

Hg_chrom4_TN10mRNA_8022

Organism: Heterodera glycines Gene Locus: chr4:5963318-5963752 Feature type: polypeptide

Protein Sequence

Length: 126

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.923	1.846	1.154	0.274	0.794	0.611	0.756	0.0	0.705	0.429	1.203	2.334	1.323	1.984	0.972	0.34	1.431	1.443	1.221	0.934	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7542	—	—	2.778	3.000	3.000	2.000	4.000	2.000	3.000	4.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRIGYAFKTTKPKRI	—	—	—	—	—	—	0.000	—	—	0.506	0.247	0.014	0.557	0.089	0.129	0.157	0.012	0.257	0.249

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000151	4.000	9.000	Hsc_gene_15400.t1;Hsc_gene_259.t1;Hsc_gene_5887.t1;Hsc_gene_5897.t1;Hsc_gene_5901.t1;Hsc_gene_5903.t1;Hsc_gene_5976.t1;Hsc_gene_8492.t1;Hsc_gene_8493.t1	Hsc_gene_15400.t1;Hsc_gene_15424.t1;Hsc_gene_259.t1;Hsc_gene_261.t1;Hsc_gene_3356.t1;Hsc_gene_5887.t1;Hsc_gene_5889.t1;Hsc_gene_5891.t1;Hsc_gene_5892.t1;Hsc_gene_5894.t1;Hsc_gene_5896.t1;Hsc_gene_5897.t1;Hsc_gene_5899.t1;Hsc_gene_5901.t1;Hsc_gene_5903.t1;Hsc_gene_5976.t1;Hsc_gene_8492.t1;Hsc_gene_8493.t1;Hsc_gene_8494.t1	—	P53021.2 Major sperm protein 1 [Globodera rostochiensis]	ARR95827.1 major sperm protein [Heterodera schachtii];ARR95832.1 major sperm protein [Heterodera glycines];ARR95828.1 major sperm protein [Heterodera schachtii];ARR95829.1 major sperm protein [Heterodera schachtii];ARR95831.1 major sperm protein [Heterodera schachtii]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.597\|GO:0009987_0.523	IPR000535+8-125_9-112+\|IPR008962+5-125+\|IPR013783+2-126+\|IPR051155+3-125+	—	PF00635+9-112+MSP_(Major_sperm_protein)_domain	—	PTHR22920+3-125+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-126	0.000	—	1grw_D	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.893	14022.980	8.870	2.000	23.810	9.524	45.238	54.762	12.698	11.111	60.317

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	38372.354	2.764	3.856	60.144	189.094	59257.157	73.382	68987.369	0.000	119663.886	68379.364

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	4.311	4.068	1.622	8.305	-9.646	—	-9.727	-30.000	6.767	-7.043	—	—

No JSON data available for plots.

Back to Browser