SCN Proteipedia

Hg_chrom4_TN10mRNA_8023

Organism: Heterodera glycines Gene Locus: chr4:5965676-5974548 Feature type: polypeptide

Protein Sequence

Length: 1,421

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.802	0.9	0.844	1.019	1.29	1.173	0.972	0.844	1.11	1.198	0.789	0.911	0.801	1.029	1.58	1.397	0.9	0.896	0.704	0.228	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7543	—	—	1.111	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRRS,RKRTKKGGLFKK,RKRRRGICCWGRRKAA,KKWDEMEKQKEKKRLAK,RRKSARIWQEKEQRKLRM,RRERQNGEKNIQKERKTKK,RKTKKWDEMEKQKEKKRLA	10-80	0.942	—	—	—	—	0.000	—	—	0.317	0.152	0.038	0.582	0.268	0.197	0.332	0.032	0.539	0.083

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002095	3.000	1.000	Hsc_gene_11467.t1	Hsc_gene_11467.t1	—	A8E0R9.2 Glutamate receptor-interacting protein 2 [Xenopus laevis]	KAI1708464.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.928\|GO:0110165_0.912\|GO:0005622_0.803\|GO:0008150_0.751\|GO:0016020_0.713\|GO:0009987_0.694\|GO:0071944_0.632\|GO:0005737_0.596\|GO:0043226_0.564\|GO:0005886_0.554\|GO:0065007_0.554\|GO:0003674_0.531\|GO:0043229_0.506	IPR001478+176-251_177-252_177-255_185-260_277-371_278-372_291-370_293-374_388-478_390-474_397-478_622-702_634-721_635-702_733-817_735-820_738-816_743-820_835-916_835-919_842-913_845-919_1314-1405_1316-1411_1326-1409_1327-1385+\|IPR036034+167-250_171-263_274-375_290-373_374-479_376-491_594-717_608-723_721-823_724-829_830-919_830-932_1290-1413_1310-1408+\|IPR041489+421-474+\|IPR043545+171-1408+	SM00228+185-260_293-374_397-478_634-721_743-820_845-919_1326-1409+	PF00595+177-255_291-370_635-702_738-816_842-913_1327-1385+PDZ_domain\|PF17820+421-474+PDZ_domain	—	PTHR46227+171-1408+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	91-135;476-525;561-609;952-1007;1167-1314	6.000	1-90;136-475;526-560;610-951;1008-1166;1315-1421	1p1d_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.858	155419.900	7.880	20.000	27.023	6.263	50.739	49.261	14.638	12.386	53.061

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	orange	1063.775	2262.056	3603.826	1178.016	602.089	526.140	504.580	1850.439	533.130	306.488	403.620

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.443	-1.078	-1.504	-0.999	—	—	1.711	-1.732	—	—	—	—	—

No JSON data available for plots.

Back to Browser