Hg_chrom4_TN10mRNA_8026
Organism: Heterodera glycines Gene Locus: chr4:5977803-5982081 Feature type: polypeptideProtein Sequence
Length: 762
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 1.129 | 0.835 | 0.634 | 1.706 | 1.043 | 0.844 | 1.378 | 1.05 | 0.993 | 0.974 | 1.621 | 1.422 | 0.656 | 1.553 | 0.75 | 0.753 | 0.815 | 1.413 | 0.54 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7544
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKKR,RKRR,RRTKKSQKRDNNWEKGRKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.275
|
0.196
|
0.006
|
0.525
|
0.104
|
0.141
|
0.175
|
0.025
|
0.185
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008681
|
1.000
|
1.000
|
Hsc_gene_11466.t1
|
Hsc_gene_11466.t1
|
— |
P32756.1 Choline O-acetyltransferase [Caenorhabditis elegans]
|
KAH7726558.1 Protein CHA-1 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746
|
GO:0008150_0.893|GO:0005575_0.771|GO:0110165_0.762|GO:0003674_0.736|GO:0005622_0.712|GO:0016020_0.676|GO:0043226_0.652|GO:0005737_0.629|GO:0003824_0.606|GO:0043227_0.606|GO:0008152_0.597|GO:0043229_0.578|GO:0009987_0.560|GO:0043231_0.535|GO:0016740_0.510
|
IPR000542+28-755+|IPR023213+31-107_501-641_658-760+|IPR039551+43-746+|IPR042231+108-221_238-500+
|
— |
PF00755+43-746+Choline/Carnitine_o-acyltransferase
|
— |
PTHR22589+28-755+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32;205-274;630-681
|
3.000
|
33-204;275-629;682-762
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
86941.420
|
6.864
|
4.500
|
31.627
|
11.549
|
50.394
|
49.606
|
16.798
|
14.829
|
45.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
571.713
|
523.748
|
2362.779
|
713.417
|
213.925
|
132.527
|
123.058
|
739.247
|
233.089
|
523.166
|
398.847
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.945
|
0.308
|
-1.619
|
-1.769
|
-0.677
|
— |
2.377
|
-2.446
|
— | — | — | — | — |
No JSON data available for plots.