SCN Proteipedia

Hg_chrom4_TN10mRNA_8028

Organism: Heterodera glycines Gene Locus: chr4:6000096-6009486 Feature type: polypeptide

Protein Sequence

Length: 1,352

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.937	0.877	0.982	0.459	0.949	1.138	0.96	1.036	1.463	1.199	0.863	1.175	1.007	0.825	1.042	1.046	1.031	1.255	0.797	0.609	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7546	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.911

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KKPR,KPRK,KRRR,RKEKLREEKRTRRRSKASD	—	—	—	—	—	—	0.000	—	—	0.102	0.130	0.011	0.182	0.372	0.530	0.427	0.008	0.763	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002096	2.000	2.000	Hsc_gene_11463.t1;Hsc_gene_3152.t1	Hsc_gene_11463.t1;Hsc_gene_3152.t1	—	Q16720.3 Plasma membrane calcium-transporting ATPase 3 [Homo sapiens]	KAI3416130.1 Plasma membrane calcium-transporting ATPase 3 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005388\|GO:0005524\|GO:0016020\|GO:0016887\|GO:0070588	GO:0008150_0.953\|GO:0005575_0.935\|GO:0110165_0.934\|GO:0016020_0.900\|GO:0071944_0.867\|GO:0005886_0.855\|GO:0009987_0.831\|GO:0003674_0.752\|GO:0006810_0.702\|GO:0051179_0.702\|GO:0051234_0.702\|GO:0043226_0.640\|GO:0032501_0.603\|GO:0005622_0.601\|GO:0006811_0.592\|GO:0006812_0.558\|GO:0030001_0.558\|GO:0065007_0.546\|GO:0055085_0.524\|GO:0050789_0.518\|GO:0043227_0.517\|GO:0043229_0.503	IPR001757+144-273_421-516_792-906+\|IPR004014+44-118_50-113+\|IPR006068+911-1089+\|IPR006408+372-1094+\|IPR008250+178-275+\|IPR018303+487-493+\|IPR022141+1127-1170+\|IPR023298+50-1095+\|IPR023299+491-721_517-718+\|IPR036412+484-930+\|IPR044492+467-878+	SM00831+44-118+	PF00122+176-283_369-464+E1-E2_ATPase\|PF00689+911-1089+Cation_transporting_ATPase,_C-terminus\|PF00690+50-113+Cation_transporter/ATPase,_N-terminus\|PF00702+687-840+haloacid_dehalogenase-like_hydrolase\|PF12424+1127-1170+Plasma_membrane_calcium_transporter_ATPase_C_terminal\|PF13246+542-631+Cation_transport_ATPase_(P-type)	G3DSA:1.20.1110.10:FF:000001+843-1094+Calcium-transporting_ATPase\|G3DSA:1.20.1110.10:FF:000002+96-166+Calcium-transporting_ATPase\|G3DSA:1.20.1110.10:FF:000013+353-510+Calcium-transporting_ATPase\|G3DSA:2.70.150.10:FF:000001+151-277+Calcium-transporting_ATPase\|G3DSA:3.40.1110.10:FF:000060+518-714+Calcium-transporting_ATPase\|G3DSA:3.40.50.1000:FF:000007+716-842+Calcium-transporting_ATPase	PTHR24093+24-1093+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-13;275-321;1160-1352	2.000	14-274;322-1159	2voy_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.717	147707.930	7.159	10.000	23.964	8.802	45.784	54.216	12.870	11.095	52.811

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	5027.341	9503.002	8726.381	4612.667	4413.630	7390.589	5186.907	7546.633	3690.311	1459.457	2415.537

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.352	-1.180	-0.812	-0.096	0.758	-0.501	—	-0.399	—	—	—	—	—

No JSON data available for plots.

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