SCN Proteipedia

Hg_chrom4_TN10mRNA_8033

Organism: Heterodera glycines Gene Locus: chr4:6039302-6042958 Feature type: polypeptide

Protein Sequence

Length: 707

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.707	0.822	1.003	0.927	0.896	1.161	0.589	1.273	1.477	1.529	0.579	1.248	1.964	1.006	1.357	1.111	0.765	0.857	0.218	1.04	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7551	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.987

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	33-61	0.982	—	—	—	—	0.000	—	—	0.454	0.102	0.026	0.604	0.218	0.205	0.130	0.008	0.129	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008686	1.000	1.000	Hsc_gene_11453.t1	Hsc_gene_11453.t1	—	A6QNT8.1 Protein transport protein Sec24A [Bos taurus]	KAI1703848.1 sec23/Sec24 trunk domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006886\|GO:0006888\|GO:0008270\|GO:0030127	GO:0008150_0.950\|GO:0009987_0.854\|GO:0005575_0.796\|GO:0110165_0.796\|GO:0051179_0.708\|GO:0005622_0.705\|GO:0051234_0.698\|GO:0016020_0.696\|GO:0006810_0.691\|GO:0051641_0.653\|GO:0005737_0.649\|GO:0043226_0.636\|GO:0043229_0.618\|GO:0071944_0.604\|GO:0043227_0.597\|GO:0005886_0.593\|GO:0043231_0.584\|GO:0051649_0.546\|GO:0046907_0.537\|GO:0071840_0.511\|GO:0016043_0.507\|GO:0003674_0.503	IPR006895+43-79+\|IPR006896+116-350+\|IPR006900+449-552+\|IPR007123+580-649+\|IPR012990+355-437+\|IPR029006+557-683+\|IPR036174+38-115+\|IPR036175+449-553+\|IPR036180+559-703+\|IPR036465+116-345_118-352+\|IPR050550+1-703+	—	PF00626+580-649+Gelsolin_repeat\|PF04810+43-79+Sec23/Sec24_zinc_finger\|PF04811+116-350+Sec23/Sec24_trunk_domain\|PF04815+449-552+Sec23/Sec24_helical_domain\|PF08033+355-437+Sec23/Sec24_beta-sandwich_domain	—	PTHR13803+1-703+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-707	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.644	80482.710	7.059	6.000	23.904	13.437	44.413	55.587	13.013	10.891	46.110

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	1665.856	1800.477	1813.327	1781.114	1865.890	1908.714	1660.684	1804.829	1255.061	1608.686	1457.132

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.220	-0.153	—	—	—	-0.193	—	—	—	—	—	—	—

No JSON data available for plots.

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