Hg_chrom4_TN10mRNA_8034
Organism: Heterodera glycines Gene Locus: chr4:6043265-6046943 Feature type: polypeptideProtein Sequence
Length: 584
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.856 | 1.075 | 0.841 | 0.59 | 1.027 | 1.142 | 0.795 | 1.113 | 1.104 | 1.342 | 1.064 | 1.007 | 1.665 | 0.79 | 0.978 | 1.272 | 0.561 | 0.986 | 1.449 | 0.856 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7552
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — |
1-32
|
0.850
|
0.998
|
1.000
|
1.000
|
0.190
|
0.112
|
0.033
|
0.155
|
0.458
|
0.427
|
0.724
|
0.351
|
0.212
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008687
|
1.000
|
1.000
|
Hsc_gene_11452.t1
|
Hsc_gene_11452.t1
|
— |
Q617Y0.1 Nucleoside-diphosphatase mig-23 [Caenorhabditis briggsae]
|
KAI1729873.1 GDA1/CD39 (nucleoside phosphatase) family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.872|GO:0110165_0.866|GO:0008150_0.815|GO:0003674_0.750|GO:0016020_0.741|GO:0009987_0.740|GO:0005622_0.636|GO:0003824_0.630|GO:0016787_0.593|GO:0005737_0.592|GO:0043226_0.579|GO:0016462_0.565|GO:0016817_0.565|GO:0016818_0.565|GO:0071944_0.563|GO:0043227_0.545|GO:0008152_0.541|GO:0005886_0.540|GO:0043229_0.539|GO:0044238_0.523|GO:0044237_0.516|GO:0043231_0.511|GO:0017110_0.508
|
IPR000407+13-502_44-508_174-189+
|
— |
PF01150+44-508+GDA1/CD39_(nucleoside_phosphatase)_family
|
— |
PTHR11782+13-502+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-584
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
65688.110
|
8.447
|
12.500
|
24.829
|
13.014
|
46.233
|
53.767
|
14.041
|
10.788
|
47.945
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1451.584
|
732.150
|
1201.086
|
1189.251
|
1238.112
|
1500.327
|
1295.354
|
1415.606
|
784.325
|
2547.981
|
1792.129
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.485
|
0.563
|
— | — |
0.292
|
-0.202
|
— | — | — | — | — | — | — |