Hg_chrom4_TN10mRNA_8039
Organism: Heterodera glycines Gene Locus: chr4:6075884-6080489 Feature type: polypeptideProtein Sequence
Length: 590
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 1.655 | 0.586 | 3.331 | 0.593 | 2.26 | 1.069 | 0.424 | 0.603 | 0.756 | 0.385 | 1.196 | 1.601 | 1.565 | 0.761 | 1.041 | 0.667 | 0.77 | 0.782 | 0.748 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7557
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.258
|
0.138
|
0.025
|
0.240
|
0.076
|
0.174
|
0.072
|
0.085
|
0.224
|
0.913
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008691
|
1.000
|
1.000
|
Hsc_gene_11446.t1
|
Hsc_gene_11446.t1;Hsc_gene_11446.t2;Hsc_gene_11446.t3;Hsc_gene_11446.t4
|
— |
Q868Z9.2 Papilin [Drosophila melanogaster]
|
NP_001256873.1 BPTI/Kunitz inhibitor domain-containing protein [Caenorhabditis elegans];CCE71906.1 BPTI/Kunitz inhibitor domain-containing protein [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.801|GO:0005575_0.719|GO:0110165_0.715|GO:0003674_0.635|GO:0009987_0.611|GO:0065007_0.513|GO:0005488_0.511
|
IPR002223+61-114_62-114_63-113_166-219_168-218_168-219_267-320_269-319_373-426_375-425_478-531_480-530_532-546_533-586_535-585_560-570_570-585+|IPR006150+14-55_116-161_322-368_430-474+|IPR020901+563-581+|IPR028150+21-54_117-161_323-368_432-474+|IPR036880+56-116_59-114_158-220_161-226_259-321_264-320_364-429_370-426_469-531_475-532_533-587_533-588+|IPR053014+532-588+
|
SM00131+61-114_166-219_267-320_373-426_478-531_533-586+|SM00289+14-55_116-161_322-368_430-474+
|
PF00014+62-114_168-219_269-319_375-425_480-530_535-585+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain|PF14625+21-54_117-161_323-368_432-474+Lustrin,_cysteine-rich_repeated_domain
|
— |
PTHR46339+532-588+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-590
|
1bik_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.902
|
63869.280
|
6.265
|
-0.500
|
13.898
|
10.169
|
41.186
|
58.814
|
7.119
|
6.780
|
60.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
489.262
|
307.343
|
488.852
|
432.507
|
463.370
|
274.650
|
1400.085
|
192.458
|
3.792
|
802.950
|
460.454
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.437
|
0.356
|
— | — |
-0.741
|
2.361
|
-0.619
|
3.007
|
-7.908
|
7.094
|
— | — | — |
No JSON data available for plots.