Hg_chrom4_TN10mRNA_8040
Organism: Heterodera glycines Gene Locus: chr4:6077982-6079204 Feature type: polypeptideProtein Sequence
Length: 325
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.145 | 0.839 | 0.637 | 1.231 | 0.789 | 0.916 | 1.385 | 0.957 | 1.455 | 0.513 | 0.724 | 1.709 | 1.183 | 1.695 | 0.571 | 0.706 | 1.026 | 1.657 | 0.724 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7558
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
40-68
|
0.894
|
— | — | — | — |
0.494
|
— | — |
0.350
|
0.380
|
0.113
|
0.280
|
0.330
|
0.151
|
0.251
|
0.022
|
0.157
|
0.322
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008692
|
1.000
|
1.000
|
Hsc_gene_11447.t1
|
Hsc_gene_11447.t1
|
— |
Q75UG4.1 Prolyl 4-hydroxylase subunit alpha-3 [Bos taurus]
|
KAI1727162.1 2OG-Fe(II) oxygenase superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005506|GO:0016705|GO:0031418
|
GO:0005575_0.816|GO:0110165_0.814|GO:0016020_0.735|GO:0005622_0.710|GO:0005737_0.685|GO:0071944_0.678|GO:0005886_0.669|GO:0043226_0.663|GO:0043229_0.655|GO:0043227_0.640|GO:0043231_0.623|GO:0003674_0.613|GO:0008150_0.557|GO:0005773_0.554|GO:0012505_0.544|GO:0003824_0.511
|
IPR005123+165-280+|IPR006620+95-279+|IPR044862+176-279+|IPR045054+82-282+
|
SM00702+95-279+
|
PF13640+176-279+2OG-Fe(II)_oxygenase_superfamily
|
— |
PTHR10869+82-282+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
294-325
|
1.000
|
1-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
36926.180
|
7.174
|
3.500
|
26.462
|
13.538
|
42.769
|
57.231
|
14.462
|
12.000
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.