Hg_chrom4_TN10mRNA_8041
Organism: Heterodera glycines Gene Locus: chr4:6084424-6085479 Feature type: polypeptideProtein Sequence
Length: 187
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 1.119 | 0.389 | 1.291 | 0.535 | 1.783 | 0.573 | 1.337 | 0.832 | 1.084 | 0.729 | 1.573 | 2.822 | 1.748 | 1.091 | 1.146 | 0.964 | 0.486 | 0.823 | 0.629 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7559
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
30-51
|
0.998
|
1-23
|
0.855
|
0.776
|
0.000
|
0.000
|
0.344
|
0.322
|
0.026
|
0.213
|
0.132
|
0.072
|
0.094
|
0.015
|
0.212
|
0.958
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003859
|
1.000
|
2.000
|
Hsc_gene_11446.t3;Hsc_gene_11446.t4
|
Hsc_gene_11446.t1;Hsc_gene_11446.t3
|
— |
P86862.1 KappaPI-actitoxin-Ael3a [Anthopleura elegantissima]
|
KHN72732.1 Toxin APEKTx1 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.740|GO:0005575_0.732|GO:0110165_0.727|GO:0003674_0.575|GO:0009987_0.516
|
IPR002223+130-183_131-183_132-182_157-167_167-182+|IPR020901+160-178+|IPR036880+126-184_129-185+|IPR050098+103-184+
|
SM00131+130-183+
|
PF00014+131-183+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR10083+103-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-187
|
4u32_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
21208.450
|
9.605
|
11.500
|
18.182
|
16.043
|
43.850
|
56.150
|
12.834
|
5.348
|
49.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
24.622
|
18.286
|
6.250
|
15.124
|
11.034
|
9.179
|
11.586
|
5.378
|
0.000
|
78.909
|
45.090
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.790
|
— |
1.394
|
— | — | — | — |
1.250
|
-7.080
|
4.776
|
— | — | — |