Hg_chrom4_TN10mRNA_8043
Organism: Heterodera glycines Gene Locus: chr4:6091517-6092855 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.911 | 1.331 | 0.767 | 0.519 | 1.355 | 2.008 | 0.466 | 0.904 | 0.268 | 1.018 | 0.821 | 1.595 | 1.339 | 1.448 | 1.475 | 1.334 | 0.79 | 0.73 | 0.927 | 0.709 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7561
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRTLKNRGYALNCRTRRM,RRTLKNRGYALNCRTRRMR
|
— | — |
66-87
|
0.985
|
— | — |
0.000
|
— | — |
0.843
|
0.273
|
0.006
|
0.352
|
0.072
|
0.039
|
0.050
|
0.004
|
0.074
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002097
|
2.000
|
2.000
|
Hsc_gene_11444.t1;Hsc_gene_11444.t2
|
Hsc_gene_11444.t1;Hsc_gene_11444.t2
|
— |
Q90596.1 Transcription factor MafK [Gallus gallus]
|
KAF7632964.1 bZIP_Maf domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677|GO:0003700|GO:0006355
|
GO:0008150_0.879|GO:0005575_0.823|GO:0110165_0.823|GO:0009987_0.815|GO:0065007_0.788|GO:0005622_0.787|GO:0003674_0.775|GO:0005488_0.775|GO:0043226_0.760|GO:0043229_0.745|GO:0050789_0.744|GO:0050794_0.733|GO:0008152_0.663|GO:0009058_0.663|GO:0009059_0.663|GO:0010467_0.663|GO:0043170_0.663|GO:0044237_0.663|GO:0044249_0.663|GO:0016020_0.657|GO:0003676_0.646|GO:0097159_0.646|GO:0006139_0.641|GO:0016070_0.641|GO:0032774_0.641|GO:0034654_0.641|GO:0044238_0.641|GO:0090304_0.641|GO:0141187_0.641|GO:0019222_0.626|GO:0031323_0.626|GO:0060255_0.623|GO:0080090_0.621|GO:0006351_0.617|GO:0009889_0.609|GO:0031326_0.609|GO:0043227_0.605|GO:0010468_0.600|GO:0010556_0.600|GO:0003677_0.594|GO:0043565_0.591|GO:0019219_0.583|GO:0051252_0.580|GO:0005634_0.574|GO:0043231_0.574|GO:2001141_0.570|GO:0006355_0.566|GO:0003690_0.559|GO:1990837_0.559|GO:0048518_0.512|GO:0048522_0.503
|
IPR004826+127-206+|IPR008917+126-165+|IPR024874+106-242+
|
— |
PF03131+127-206+bZIP_Maf_transcription_factor
|
— |
PTHR10129+106-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;76-259;322-332
|
2.000
|
28-75;260-321
|
7x5g_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
37797.230
|
7.708
|
4.000
|
26.807
|
10.241
|
54.518
|
45.482
|
14.458
|
12.349
|
49.699
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
195.178
|
22.578
|
45.215
|
165.627
|
334.203
|
59.477
|
25.916
|
58.890
|
28.636
|
565.461
|
335.393
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
2.740
|
1.981
|
0.981
|
-2.476
|
-1.192
|
— |
-1.046
|
-4.453
|
— | — | — | — |
No JSON data available for plots.